AMCG00019325


Basic Information

Item Value
gene id AMCG00019325
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14896825 ~ 14901846 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019325
AAGCAGCAGGTGGTGCAACTTAGTAAGAAACcaacataagaaaaataaaataaaataggcaaTGATTATTAAACCAGATGGATATGTTTATGAAGTAATGAATAGTTTATTTGTGTCCTTAAAATTAAGCCAAATTACACAAAAGAGAACACAGAACTTGTAGAAATGGATATGTGAGACACTCTCTGCATCATATCACTTCCTGATCTACTTCCTGATTCACAATagagaaagtgaaaataaatcttgattttgtttatcCCTGACACTTAAAATGCTTCGTGAACTCAGCAAATGGGAAGACCCCTATCATTACTGCTAGCAGTTGTCTGCTACGATGTTGTATCACAAAATGGGCAGTCATTCCAACATATAATCAAATCTCATCAAGATGGATACCTCTGAAGAGGCTGGGGACACAAGAAATGAAGAAGAATCATGTTGTGAGGATTTTGATTGTCCAATATGCCAAGAAGTCTTCAAAACACCCATCAGAACTAAAATCTGCAGGCACATATTTTGTAAAAACTGCTTTCTGGCAGCAGTGAGGACTCAAGGGCCACGCTGCCCATTTTGCAGAGGACCTGTGTCTGAGGATGAGAAAAGAGCCACTGATATAAATCGCCTAATGAGggagaagaaaggaaaatgcagGGCCTGTGGGACTTTGAGTGTTTTCAGTAAAATGAGAGTACACTATAAGTCCTGCAACAAGTACAGAGAACAGTATGGTTCTGCTCCCAGTGCACCTGTGGTGCCAAGAACACAGGGGGCAGTGATTGACTGGGCACAGGGTACAGCTGGAAACAGtatggGAACCACATATTCTTGCCCCTATTGTCAACAGCAGGGTTTGTCTGATATGTGTTTGGTGCAGCACTGTAAAGAAAATCACATTGGGGACCCTACTCCCGTGGTATGTCCTATCTGTGCAGCAACATCTTATGGAAATCCAAGCTACCACAGCACTAATTTCATCAGGCACTTAACTGCAAGGCACAGGTTCAGCTATGATGCTTATatgaACATACATGAGGATGAGGATGCTCAATTAAATGTTGTCATCCAGCAGTCTCTTCTccagagcatttaaaaatatatgatttttgaAGTGTATGCAAGATACATTGTCAATATTAGTTCTATATGGTCCTTGTTaatattatatgtaaatataatgatttattaCAAGATACTTTTATTTCTTGTGAAGTAAATTGTATTTagatgtaaaatgcattaaacaaaagtaCGCTACAAATAGTATATTCCATAGCCTGCTATATCTTTATTACTGAGTGATGATTAGAGTTCAATATTTCTGCAGTTTTTCCAATTGGGATATACTATTATGTATAAAGCTCAGTATGgtattttagtaaataaaaaagctgcattgaagaaaaggaaaactctctccattatgaaaaataagaattatcTTAGTAGATAATTTCTCAAAGTGATATTGAACTTGGCATACtgaattaagaaaattaataataatccttttTGTAAGATACAATTTGTTTAAACAGTTATGTAATTAGCTTGTTTGCTTCATTATTGATTCATTATATGCTTTCTAtaattgtttaaacatattttcttgttaTAAGTTTGCTAAGGATGAATATTAGTTGCTGTGCTTACACTACTGGTTTTTTATGAAGTTGTGTTATGGTACTCAAACTCAAACAATGTATGCTGGCAGTAGTTCTAAAACGGGGTTAAGATGAAAAGTTGGCTTTACTATCTtatgaattttgcattaaatatgGACTCATGTTCTAATCTATAAATTATGAAGGGATGTCAAAGGTGACAATATCAACACAAAATgccatttaaactgtattatacaaaacaaatcaatacaaaaataaaacaatacaaa

Function

GO: NA

KEGG:

id description
K10668 RNF138; E3 ubiquitin-protein ligase RNF138

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019325 True 1897 mRNA 0.35 7 14896825 14901846

Neighbor

gene id symbol gene type direction distance location
AMCG00019321 NA coding upstream 175933 14714805 ~ 14720892 (+)
AMCG00019322 NA coding upstream 198626 14672973 ~ 14698199 (+)
AMCG00019316 NA coding upstream 1222073 13670253 ~ 13674752 (+)
AMCG00019314 psma8,LOC100304914,LOC103029839,LOC105907112,LOC105011885,LOC107572146,LOC102789190 coding upstream 1230248 13662222 ~ 13666577 (+)
AMCG00019306 NA coding upstream 1586003 13292718 ~ 13310822 (+)
AMCG00019331 NA coding downstream 1496 14903342 ~ 14907478 (+)
AMCG00019324 NA coding downstream 12179 14914025 ~ 14927971 (+)
AMCG00019323 NA coding downstream 37094 14938940 ~ 14945227 (+)
AMCG00019337 NA coding downstream 317375 15219221 ~ 15228776 (+)
AMCG00019336 NA coding downstream 338676 15240522 ~ 15255397 (+)
G33161 NA non-coding upstream 404619 14491892 ~ 14492206 (+)
G33153 NA non-coding upstream 610809 14285565 ~ 14286016 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding upstream 736122 14152802 ~ 14160703 (+)
G33093 NA non-coding upstream 1258654 13633702 ~ 13638171 (+)
G33075 LOC104962440 non-coding upstream 1585083 13311414 ~ 13311742 (+)
G33307 NA non-coding downstream 582232 15484078 ~ 15533196 (+)
G33392 NA non-coding downstream 1026723 15928569 ~ 15931201 (+)
G33404 NA non-coding downstream 1100950 16002796 ~ 16003201 (+)
G33408 NA non-coding downstream 1199112 16100958 ~ 16101159 (+)
G33422 NA non-coding downstream 1464268 16366114 ~ 16366342 (+)
G33159 LOC103376870 other upstream 410119 14439253 ~ 14486706 (+)
G32539 NA other upstream 4487328 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 5268163 9369898 ~ 9628662 (+)
G32286 NA other upstream 5357614 9261374 ~ 9539211 (+)
G33283 NA other downstream 262502 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 652973 15554819 ~ 15626955 (+)
G33406 NA other downstream 1142096 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 2547474 17449320 ~ 17452659 (+)
AMCG00019402 NA other downstream 4103178 19005024 ~ 19021412 (+)

Expression


Co-expression Network