AMCG00019326 (b4galt6,LOC104925469,LOC106560385)


Basic Information

Item Value
gene id AMCG00019326
gene name b4galt6,LOC104925469,LOC106560385
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14720859 ~ 14731647 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019326
AGCCAATACCTACTTCTTCATGGTTCAAGCCCAAGGTATTATGTTAAGGGACAATGTGAGAACAATAGGACACATGATTAGACTGTAcaccaacaaaaacagcacTCTCAATGGCACAGaTTATCCGGATGGCAATAACTCCAGTGAATACATTGCTCAACCAACAACATATCTCCCAGAGAATTTCACTTATGCTCAGAATCTTCCTTGTCCTGAAAAATTACCTTCTATGAAGGGTCGTATTGATGTTAATATGACTGAAATCGCAATGGAAGAAATTTATTTGGGATTTTCAAAGTTCCTGGATATTCAGTTTGCAGGGCACTGGAAGCCAAAAGACTGCAAACCTCATTGGAAGGTGGCAATACTTATTCCCTTTCGAAACCGCCACGAACATCTCCCAATATTGTTTCGACATCTTATACCTATGCTTCAAAGACAGCGCTTGCAGTTCGCTTTCTATGTTATTGAGCAGACTGGCACCCAGCCCTTTAACCGTGCCATGCTGTTTAATGTGGGCTTCAAGGAGGCCTTGAAGGATCTGGATTGGGATTGCTTCATCTTCCATGATGTGGATCACATTCCAGAAAATGATCGAAACTACTATGGTTGTGGTCAAATGCCCCGTCACTTTGCTGCTAAACTtgacaaatatatgtatatTCTTCCTTACAGCGAGTTCTTTGGTGGAGTAAGTGGCCTGACTGTGGAGCAGTTCCGGAAGATTAATGGATTTCCGAATGCCTTTTGGGGCTGGGGTGGAGAAGATGATGATCTTTGGAACAGAGTGCACTATGCAGGATTCAATGTGACAAGGCCAGAGGGAGAAAttggaaaatacaaatcaatccCACATCATCACAGAGGGGAAGTACAGTTTTTGGGGAGatacaAGTTGCTAAGATACTCCAAAGAACGGCAACACCTTGATGGGCTGAACAACTTGAATTATACCCCTGAAATAACTTTGAGCAACTTGTATAAGAATATAACCGTGAACCTTACTCCAGAACTAGCTCCTATTGGAGATTATTGAACTGTCATCCATTCTCAGTTTGTATGAACTCTTGAACCAAATGATGAAGATCCCAGACTGAAACCAATGTCAGCACAGTAATTGGAGCATGGTGTAACATTGCCaagttactttatttttagtgaAGATTTTATGAAGGGATGTAGGGCCTGTATAATCGAACAATTGATTGTTTGTCATTGCATGTTAAGTGTCTGTGCTGGCTTTTGCTATTAAACTCATCACACTTTGAAGGAAGGAGTGCCAGCTTCAAAAATTAAGATGTTTACTGCACAGCCTTAATAAATTAGGCTTTGTGTCACATTTGTTATCATGAAAAGCCACTTCAGTAAACTTGTTAATCTTACATTAGAGCCAATAGAGATCTGTGTCCTACCGTATATATTGTTTCTACACAtatcattttgattttattatttgaaatcaaagcttttgtttttctaagaaaaaaaaaaaagtgcaggtgattgtttgtaaatgtgatgtaaatatacaatgtgtgttgtatttttttggttttgttttggtttcagttCTTCACTTTAGTAGCACTCCTGTTCATAGGTCCCGCAGGCATTTTCCATTCCTCTGGCTGTATAGTGTATTGTAGAGACCATTTGCATGAATCGAGCATATGTAAATACAGGCCTTTTTAAAGTTTAACATATTAGAATTATTAAGCATATTACAATGTATCTTTTTTTGGCAGCTATGACTTTCAGATTACTAGGTAACCTCTATAAATTATGAGTGAGTGGCCTTCAGCAAGGGCAGGCATATTGCATTTATTGTGGGCAGAGGttttcacttaaaacaaaaaacaaaacaaaaatctttagGTTGACATCTTCTGCATgccttaatttattattttatttgttaaacacttttttttatcatttcagaagtgttcatttttttatgttttgcttttttgttgcaTATGATGATTTTGAGAACTTTTGAAGTGCactgtggaaagaaaatacGTTTACAGTGAAGGCATGGTGGTTAGTCACAGAGTGCTATGGGGCAGATGTCTTGAGCATAATTGTGCCAGTGCTGCTATATGCCAGAATGTTCTGATACAATTATTTCCCAAGTTGGATTGTAAGTTATAGTTTATCTTGATACTGCGTTTCCATTTAAAGCTGTTCAGACTTTAAAATGAGCCGAAATGTGAGGACACTGAACTGATTGTCCTTGAATGGCATGAGGAATAAATCTGGGCCATGAGAACTTTATTATATAAAAGTTTTGAGCACTACAAGCAattgcaaaaaaatacaatagtggtttatttttatatgtattgtatcctttattttatctgtgcttgtttttttgttttcgatATCGTTTTCATATATGATAAATACTTCTAAATCAATTGGTGCTTTTTTATAGTTTGCAAAATTGCCAACACAACTGCAGTTGCAGTGCCCTGGAACTCACTATTAAATATCCCGAGTGAAGTGTACATAAACAGTCATGTAAATAATTGTCAGTGAAGTTGGAGAGAGAATTATAGGCAGACAGCAAAGCCAaagtcatttgttttgtaatttattaatgaacaatttgttgtaaaatgtaatggaaatttCATAGGAGTCCatagaatataaaacaatggctcccattaataatataaaaatccaCACTACATGATTGCATATTTCTTCTGTAAGGTGTGTACAGTATTTTCggtgaaattatgtatttgcatGTAAATGACTAGTTGAGGCAGTGGACTGACTTTAAGATCAGTTTGGATTTGGAAAATTGGAAATTGAAATTTGGAAATTGAAATCATATGTTAAAAAATGTCTGAACTGAGAATCCTACTGAGAATCAGATACaattaagtttgttttgaatattCAGTTGTTGGTTGTCCTTTGAGTCCTGTTTTGTACTCATGACATGGTTAATCTTTAACGTTACAACCAAAACACATCAAATCCATCTCCCAGAGCTTTTCACTCAAAGGATAAGTGGTTTCTTGTTCAAGATTCCTAGCTGGCAGGAATATTTGGTTATTAAAGAAACTGTCTCAGAGGCTATACACAAGTTGCTTTACAAATGGATTGTTTATGACTCCCTAAATTCCCAAATAGTGTATTcaccattacaattattttgtaatgtggagtattacattttgcagtatTCATATCTGTGCCTTGaggttatgtttttgtttttttgtgtgtgatttatttccAACCgtactgttaaaaaatatttatttttacgtACATAGCTGTGAACTAAGGCTTGGATTGTTCTGTATTGAAATTGAgtgcacagatttttttttttttttttttttttttaaattgagccC

Function

symbol description
b4galt6 Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6).

NR:

description
PREDICTED: beta-1,4-galactosyltransferase 6

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0008489 UDP-galactose molecular_function

KEGG:

id description
K07553 B4GALT6; beta-1,4-galactosyltransferase 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019326 True 3386 mRNA 0.35 8 14720859 14731647

Neighbor

gene id symbol gene type direction distance location
AMCG00019327 NA coding downstream 82627 14616919 ~ 14638232 (-)
AMCG00019320 cdh2 coding downstream 541145 14152717 ~ 14179714 (-)
AMCG00019319 NA coding downstream 896231 13817357 ~ 13824628 (-)
AMCG00019317 LOC107735723 coding downstream 962041 13749854 ~ 13758818 (-)
AMCG00019318 kctd1,LOC103479566,LOC108239680 coding downstream 981488 13733965 ~ 13739371 (-)
AMCG00019330 NA coding upstream 45161 14776808 ~ 14782550 (-)
AMCG00019328 NA coding upstream 105583 14837230 ~ 14895216 (-)
AMCG00019329 LOC107559729,LOC107553429,LOC104958571 coding upstream 195054 14926701 ~ 14937229 (-)
AMCG00019332 NA coding upstream 262161 14993808 ~ 15000069 (-)
AMCG00019333 klhl14 coding upstream 271805 15003452 ~ 15018066 (-)
G33206 NA non-coding downstream 2626 14714791 ~ 14718233 (-)
G33204 NA non-coding downstream 22447 14692705 ~ 14698412 (-)
G33132 NA non-coding downstream 638941 14081715 ~ 14081918 (-)
G33092 NA non-coding downstream 1087357 13633286 ~ 13633502 (-)
G33076 LOC104962440 non-coding downstream 1409059 13311503 ~ 13311800 (-)
G33268 NA non-coding upstream 330127 15061774 ~ 15062351 (-)
G33282 NA non-coding upstream 430065 15161712 ~ 15161967 (-)
G33285 NA non-coding upstream 451133 15182780 ~ 15184537 (-)
G33291 NA non-coding upstream 522385 15254032 ~ 15256023 (-)
G33393 NA non-coding upstream 1126530 15858177 ~ 15931208 (-)
G33163 NA other downstream 162569 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 1055629 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 1532567 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 2297539 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 2835288 11852108 ~ 11885571 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 220195 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 960835 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 3653220 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 4563165 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 4710748 19442395 ~ 19454969 (-)

Expression


Co-expression Network