AMCG00019327


Basic Information

Item Value
gene id AMCG00019327
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14616919 ~ 14638232 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019327
CCACGGTGTTAATAAGCTTTGTATAACTGTGTGTATACGTACAGGCACTACAAAATATGAACTTAGAACATAACTGACATGCCTTACTGACAGCTAGATGAGCCCAGTGAGGATGTGATGGAGCCAAAATTGCAGAGGATTATGGGATGCTTACAATGCAATTTCATACCCACTTTTGTACCAGCTGGCCTCGGTGCGTTGTACAGTCTGGGACGCGCGTTAAGTGttttactttcaaaaaacagcaGATCCACTGCAACAAAATGGCCCAGGATTCATACAACTGGctctgcttttctttcatgGTGTTTGCAGTGTCTGCAGAGACTTGTATTCCCAACAGTTTACAGCCAAGTGTACCTGAGAAGTTGAAGGCTGGATTTATCATTTCAAAAGTTAATTTGGAACACTGTATGAACAAGGATATTCAGCTGAGTTCGGACGACTTGGATTTTGCAGTGCAAAGAGATGGTACAATAAGCACTCTTGTAGACACCAGTATCCCTCCTGGAGGGAGGACTTTTACAATATGGTTTGAAGATCAGCAATcaggacagaaatggaaaatggatGTCATAATGTCATTGGAACCTCAGGAGGAGCAGAGTACCAAAGCCCTGAAGCGTGCCAAAAGACGCTGGAGTCCAATGCCCTTCACCATAAAAGAAAATGGTAAACCACCCTTCCCAATGGAAATTGAACGGATAGGGTCTGATAGCTCACAGAATTACAGCGTTAATTATAGAATCAGTGGACCTGGAGTAGATATGCCACCTGTAGGTTTGATCACGGTGGATCCCAAAACAGGAATGTTGAGTGTGACTAGGCCTGTTGACCGTGAACAGTACCCAGAGATCATAGCACGAGCAGTAGATCCAGTGACCGGTAAAGACAGAGATGACCCACTTCCATTCACCGTGAAGATTGAGGATGTTAATGACAATGCCCCTCAATTTGTTGGTGGGCTTAAGCTCTCAGTGCCAGAACAATGTGATCCTGACACTATAGTGGGAACAATAAATGCCACTGACAGAGATGAGGTAGGCACACCTCACACTGCAATAAGATATAAACTTCTTTCTGGAGATGATCTGTTtgcaataaatcatttaaatggaaGACTGATCACCAAGTCCACTGCCCTTGACAGAGaggtgaaagacacacacacagtactcaTGGAAATCAGAGATATGAATGGAGCTCCAGAAGGCCTATTCAATACAGCAACTGCTACTATTCAGTTAACTGACATTAATGATAATCCACCTACATTCAGTCAAAAATCTtATGCTGCTTCAGTTAAAGAAAATGTGGGTCAAGGTTTGATTTTGCGAATTCCAGTAGAAGACAAGGATCTAGTAAATACTCCCAACtggaaagcaaaatattttattaaaaaggggAATGAAAATGCGATATTTAGAATTGAAACAGAACCAAAAACGAATGAAGGGCTCTTGTATATGAATAAGCCATTGGATTATGAGAAAGACATAAATGTGACATTGGAGATAAGCGCTGAGAATGAAGCAAAGCTGGAACACACTAGTGCAACATGGGCCACTGTTCCTGTGAATGTCAATGTGTTAAATGAAGATGAAGGTCCAGAGTTCACAGTTCCAAATTTGCTCCTTCGAGTTATGGAGAATTCGCCAAATGGAACTCTTATTGGGAACTACAAAGCAATCGACCCAGAAACTAAATCCAGCAATGGCATCAAGTACTCTAAAGTCTCGGATCCTGGTTCATGGATTAATGTTGGAGAAACCACTGGAGACCTCAAGGTTGCTAACACAATAGACAGAGAGTCACCACTGGTAACAAATGGCCTCTATAACATTACAGTGAAAGCTGTTGATTCAAgCCAGAAACCTGCTACTGGAGTTGTCAGCCTTTACATAGAAGATGTCAATGATAATAATCCAGAAATCCAatcaaaaagtttaaatatctGTGCACAGAATAATAATCTGGGCTTGACGACACTGGAAGCAAAAGACAAAGATGGCGATCCTTTTTCTAGTCCTTTCAGTTTTGACCTTGGAGACAACCAGGATGGGAAatggatattaaaaaatataaaaaATGAGACAGCTGAGCTTCACCAAAACAAAGAACTTCCAGTAGGGTTATACACAGTTCCTGTAATGGTGAAAGATCTACAAAATAAAGGAGAGTTACAGACTGTTAGCGTCAGGATCTGCAAATGTTACGGCGGACAGTGTCTTGCTGAACgtattttctttagttttgcCTGTgcaactaaaaaagaaaaagtttacaTTGATGATGCGACTGATGGCATGCTTCTGAAATCCAATACTGAGGGGCCAGGTGAAGAAATGATGAATCCAAATCTTAAGGTAATTCCTTCTGCCCCAGCTCAGCTATATGGGGAACCGATCATATCTAACGGCAGTGGACAGGGAACTCTCAATTCCAATAAACTGAATTCCTACTTAACGGAAGGGACTGACAGGTATGCAGGTGATATAATTCACTCCTATGGCTTTGAAGGGAAGGGCTCACTTGCTGGATCAGTGGGTTGCTGCAGTGACCTGGCTAATGAAGAAGGATTAGagtttttaaatacactggGACCAAAATTCAGGACACTGGCAGAGATTTGCACTAAGAAATGAAGAGTTCAATAATGTGTTTGGCATTACTGTTTTATCATTATCTCAAATAAAATCTCCCTAAAAAGGTAGAataacatttttacacatgATGAGACATGTTACACAGATGAATTACCGTGGGCACTGTTTGGTAGTGATATATGGGCAACGCCTcttatacaaatgttaaatgcagTGTTGGTGTGAATGTTTGTGTTGAAAGGTGTATTTCCTATCTGTTAACAGTGAAAGCATTTTAGCTTCCTTACATCCTGTAAATGAATTTACTTTTAGCTaagtattttgaattgcagATTTGTATAGTGCTTTCTGTTGTAGAAATCAGTCTGAAATGTCTGGGCAGGAAGGTGGGGGGCAGGGACTCAAAGGGttcagacttgttttttttatttgtgtttgttttgttgcttttctgtATATGCATCATATCACATTTTGGAATTAAAGCTGTAAAAACAAGAAccagattttcagattttttgcCACGATGCTGGGCTCTTGTAATAGGCAGGGCCTCAGGACATAGACCAAGAACAGGGAGTATAGTGCAGTAAGTGCAGGTTTAttgtcactattattattaatattagaaaACTGGTTAAGGACATTATTAGTTCTGATTGTATTGATAATTTTAAAGATAATGCAAAAGcttttttatgtgtatatatattttcctctaAATCTTGCATAGTCCCTTTGTGTTGTCAAGAAATTCTAAGAACATATAGTAGATTCCCAAAACtcaaatttgaaatacaaaattgtttttaacttgtgGATATCAATACTTTTGTAGAAATGTGTGCCTCTATGAGGTGTATGTTCAATCACTTCACTTCTTGTTGTAACTGAGGCCCCTTGGAACCCCTGgaacttttgtttgtgtgtgttagttttACTTGCATGCTATAATGACTATGCACTTGGTAGTAGCACTCATAGTTTCTAATGTATACCTTGGAAGGATCTCGAATAATATGGCAAGCAAGGGGGTAAAATGATTTTTCCATAAAAAGTTGCACCTGACTATTCAATATATCTGAAGGTGGTtttggaaaaaagcaaaaatgaatcTTGGAAATTGCTTATGTTCAGATTTCATGTGCAAAATGAATGGTCAATCCTATTCCAAAATTGTTAGCTACCAGTTATCAGGAACTCCATAGTTCTGAGATAACTGAGATAAATGAacccattttgtgaaaatatCTGTACAGgattgccattttattttattggacaTCCTCCATTACAGTTTGTCAAAAGTTCACTCATGTCATTCTCTTGTGCCTTACTCTATCGATTTGGGGTCTGAAATAGCCACCTGGTATCAATTAAAATAGTCAGGATGAGTTACCTATATGGTCTGTGACACAAAGCGTATGTCATATGCATTTATATGGATATGTATCCTTGCTCTTGGCCCACTCCATTGCATTTTAGATTCCCATTTCTCTTAAAGAGCAAATTCCTACCTTTGTCAAATGAGTTTTGTATTgttgaaaacacaaaattgaaAGATGCTTTCAATGTATTCCTTGGCTGTCCCTACTATCCTTTTAAGCTGTAATTAGTGTTGTAAATCAATATCCAGTTGTCAGTTAGATCCTGGAGATCTCATGACAAatcatgcattcatttattattgCTTTCCATTAAAAGGGCACTCTTTAAATTATAACCAGATGGCTTATTACTAGCCAGTGTGCTGTCAGGTAATTATTTAAGTGAAGGGAGTCATTGAGAgaaaatagagagaaaaaaaatgtacttaatacATGTTTGATTGCGCATTAgatctttgtgatttaattcCTAACCTAACCTAAATTAACAAGGGCTAATCACAGCTTTAAAGATAGGTAGGGACAGCtccaataaatgtaaaacatagcCAACTTAATGGTTAAAGGTGTTTGCCTTGTATTATAAAATTAAGCTACAATTTATACATGGTTTTGTGGTGGTCATATTAAGCTATTGCATACAGATTTTGTCATTGTAAATTATCCTTATTGGCTACAGCGAGGATGAAGCTTACAATCATggaaaaaatgtttgcacaccTTTTGTGTCtataagaattttttttttttttaattattctaaacCACACTTGCATATATAGATGTCTGTAATTATGCAATTCAATTAGATGGGATGTTAAATTTAAGGTTGTTAAGATGTAATGTGTAGGTTAAAAACAAAGGACCTGTTTGAACCACCCTTGTTCCAACTTCAGCCCATTTCAGGTGTGCAAGGATTTCTTCCttcaaaataagttaaataGCGGGTGatctgtaaatgtttatttgaaacattaaaacttttctgtttttctaatttttctTGTGCACACTTCtgactttttaaactgtaggAAATAGTTTTTACCACtctattaaatgttatttttaa

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0002159 desmosome assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG:

id description
K07600 DSC1; desmocollin 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019327 True 5066 mRNA 0.38 17 14616919 14638232

Neighbor

gene id symbol gene type direction distance location
AMCG00019320 cdh2 coding downstream 437205 14152717 ~ 14179714 (-)
AMCG00019319 NA coding downstream 792291 13817357 ~ 13824628 (-)
AMCG00019317 LOC107735723 coding downstream 858101 13749854 ~ 13758818 (-)
AMCG00019318 kctd1,LOC103479566,LOC108239680 coding downstream 877548 13733965 ~ 13739371 (-)
AMCG00019315 ss18 coding downstream 955881 13630005 ~ 13661038 (-)
AMCG00019326 b4galt6,LOC104925469,LOC106560385 coding upstream 82627 14720859 ~ 14731647 (-)
AMCG00019330 NA coding upstream 138576 14776808 ~ 14782550 (-)
AMCG00019328 NA coding upstream 198998 14837230 ~ 14895216 (-)
AMCG00019329 LOC107559729,LOC107553429,LOC104958571 coding upstream 288469 14926701 ~ 14937229 (-)
AMCG00019332 NA coding upstream 355576 14993808 ~ 15000069 (-)
G33132 NA non-coding downstream 535001 14081715 ~ 14081918 (-)
G33092 NA non-coding downstream 983417 13633286 ~ 13633502 (-)
G33076 LOC104962440 non-coding downstream 1305119 13311503 ~ 13311800 (-)
G33070 NA non-coding downstream 1359606 13255363 ~ 13257313 (-)
G33030 NA non-coding downstream 1510669 13103953 ~ 13106250 (-)
G33204 NA non-coding upstream 54473 14692705 ~ 14698412 (-)
G33206 NA non-coding upstream 76559 14714791 ~ 14718233 (-)
G33268 NA non-coding upstream 423542 15061774 ~ 15062351 (-)
G33282 NA non-coding upstream 523480 15161712 ~ 15161967 (-)
G33285 NA non-coding upstream 544548 15182780 ~ 15184537 (-)
G33163 NA other downstream 58629 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 951689 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 1428627 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 2193599 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 2731348 11852108 ~ 11885571 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 313610 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 1054250 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 3746635 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 4656580 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 4804163 19442395 ~ 19454969 (-)

Expression


Co-expression Network