AMCG00019328


Basic Information

Item Value
gene id AMCG00019328
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14837230 ~ 14895216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019328
GGCAACTGTAGGATTCAACATGGCTGCCCTCGACTGTCACTAGGGGAGTTGTTTTCAGCCCGGGAGCTGCAAGTTTAAAAGAACAGCTCCAACAAACCCGTCCGTGACCCGATTCCTGTTCAGCTATATCCTCTGAGAGCACAGTGCCCGCCATGGCCCAGTGTCTTCAGTCAGTGCAGGAGTTCATCCAGGACTCTTTCGTCCCTATGGTGGCCGTCTTGTGCAGCGAAGATGCGGAGAAAGTGACTCGTAAAAACAACCTGAATTTCTCTGAGCTGGTGAGGCCTTTCTGTCGTCTCACCTCGGAAGGTCATATGAGAGATCCTAATAACCAGATCCAAGttataaaaaatctaaagatAAACATATCAAACATTGTGACACAGCCTCCTCAACCCACTGTCATACGGAAGATGCTAAGTGAAGTTGTGTCCGTCAGTCAGCCTGCAGACGGATTAGTTGCTAATGTGATTACAGCTGGAGATTATGATCTCAATATAAGTGaTCGCTCAATTAAAGCTAGTGTTCCTTGGTACAATAATTGGAAAGAATCACTGATGGAACTCAGCACTTCAAAGTTCTTTACAGCAACAACACCTTGGTTTGAGGCATACAGAGAGAACTTCTTCCAGTCCATGCCAGCGTCAGATCATGAGTTTCTTAATCACTACCTGGCATGCATGCTTGTAGTGTCCTCTCGTGAAGCAGAGCCTGTGGAGCAGTTTCTAAAGCTATCCCAGGAGCAGCACCAAATTCAGCACAGCAATGAGTACTCTTATCCCAAGTGGTTTATTCCCAATACCCTGAAATATTATGTGTTACTGCATGACATCAGTGAAGGAGATGAACAAAGGGCAGATTCAGTTTATGAGGAAATGAAACAAAGATATGGAACTCAGGGCTGCTACTTACTCAAAATTAATTCACGGAGTTCAGCAATTGGATCTGATGAACAGATTCCAGACCCCTGGAGCCAGTATTTACAGAAAATCAACTTTCAAAATCAGgattTTAATGATGAAAGCCCTTCTGTGGTCATAAAcagtaaaaatatagaaaacagcATAAATGCAGAAGAAGCTGATGAGCTTGATTTTTCATccaaagATGGGGTTCCCAACAACTTTAAAGCCCATCCTCTTCAGCTGGATCATCCCAGTGATCCTGGTGGCCACCTTGACAGCCTTGAAGCCTTAAAATGCACCGCACCAGTCTCTGAAGCTAAAAAGCAAACCAGTGTTACCACTCATGGTGCTTGTTTGACACTTAACGATCATGACCGGATAAGGCAGTTCATTCAGGAGTTTACATTCAGGGGGCTCCTACCCCACATAGAAAAAACTATTCGTCAACTCAATGACCAGTTGGTGTCCCGGAAAGGATTGAGTAGGTACCCTCCAGAAGCTCCTGAACTTCAAATAAGGAAGATGGCAGATCTGTGCTTCTTAGTGCAGCACTATGATTTGGCATACAGCTGCTATCATACTGCCAAGAAAGACTTCCTGAATGACCAAGCAATGCTGTATGCTGCTGGAGCCCTGGAAATGGCTGctatttctgcttttctgcaACCGGGAGCCCCTCGGCCCTATCCAGCTCACTACATGGACACCGCTATCCAGACTTACAAGGATATGTGCAAAAATATGGTTCTGGCCGAGAGGTGTGCTTTGCTCAGTGCTGAGGTTCTGAAAAGCCAGACAAAATACTCAGAGGCTGCGACTCTCTTGATCAGAATGACAAGTGAGGATTCTGACCTGCGCAGCGCCCTTCTGCTGGAGCAGGCGGCACACTGCTTTATAAACATGAGAAGCCCAATGGTGCGCAAGTTTGCATTTCACATGATTCTGGCCGGGCATAGGTACAGTAAAGCAGGGCAGAAGAGGCATGCCCTACGCTGCTATTGCCAAGCCATGCAGGTGTACAAAGGAAAAGGCTGGTCCCTTGCCGAAGACCATATTAACTTTACCATTGGGAGACAGTCTTTCACTCTGAGGCAACTGGAAAATGCAGTCTCCGCCTTCAGGCATATATTGATCAATGACAGCAAGCAGACTGCATCTCAGCAGGGAACGTTCTTGAGAGAATATCTTTATGTTTACAAGagTGTGAGCCAGCTTTCACCAGAGGGTCCTTTGCCACAGCTCCCTTTACCTTGTATTGAGAGCTCAGCAACGCGTGTCTTCTTTGGACATGACCGAAGACTGGCAGAAGGAGTGAAGCAAGCTGCTACTCATGTCAGCCTGGACCAGGAGTTTGACAGGGATTTATCACAACAGTGGAAAGAGCTTGAGGAACAGGTTGTTGCCATTGTCAACAGAGGAGCAGTCCCAGTAAATTTTCAGCCTACTCAGTATTGTCTAAACAGCCAGACAGACAATTTGCGGTTTCCAATGGCTGTTGTGGAagAACCCATCATTGTTGAAGTAGTCTTCAAAAACCCTCTGAAGGTTCCACTGGTCCTCACTGACCTTTCACTTTTATGGAAGTTCCAACCCAAAGACTTCTGTCGACTTCAGAATGGGGAGGCTAAGGAGGTGATTAGTAATGAGAAGGATGCACATATGAAGCCAATGGTGAAAAATGATGTAATTGGCACCGAAGTAATTCCAGAATTTAACATGAGCCATGAAGAGACAAAAGTGGCACGCTTGAAACTTTTCCCTCATCAAACAGGAGAGCTGCACATTCTAGGCGTTGTTTATAACTTGGGTACTATCCCATCTCCTAATATGGTAGATGGAATAGACAGCTTTGCTGGGATACAGACAGAAGGAAATCTTACTAGCAATGGGATGTCAGTTCGAGGTCGTCAAGACTTGGAGATTCAAGGGCCTCGCCTGAACAACACTAAAGAAGAGAAGACCTCTGTGAAGCATGGCCCTGACCGCCGTCTGGATCCAGTCATTACACCGCCAATGCCATTACTTGAGgttttctttATAAATTTTCCTACTGGACTTCTTTGTGGGGAGATAAGAAAAGCATACGTCGAATTTGTGAATGTAAGCAAGGTCCCTCTAAATGCATTAAAGGTTGTGAGCAAGCACCCAGagttttttacatttggaaGCCATTCCGCACCACTGACGCCACTGAGCCCAACCGCATCCGAAAACTGCAGCGCATACAAGACCGTTGTCTCGGACTCTAGTTCTGCGTGCACAGCAACAACTTCGCTAGTGTCTCCTGTGGACTTTGGGGTGGGGTGCGATAACCCTGGCCTTGGAGTAGTGGACATACCGCTGCCAGACTCTGTGCTCCTGCCAGGAACCTCCATTCAGCTGCCCATGTGGCTGCGAGGACCTGATAAAGAAGGTGTCCATGAAATCAACTTCTTGTTCTATTACAAAAGCACAGAGAGTACTTCTAAGCTGAGTCATAGAGTTCTGCGGCACACAGCGGTGATCTGCACCAGCCGGTCTCTCAGTGTGAGGGCTACGGTGTGTCGGAGCAACACTTTCCAGGATGACGATGATGGAAGAAATGGCAACATGCTTGTTTTCGTGGATGTGGAAAACATAAACACTAATGAAGCAGGTGTCCGGGAGTTTCACATTGTGCAGGTTTCTAGTAGTAGTAAACATTGGAGgctacagaaatgtataaatccTTGTGAAGATAAAGCTACCTCAAGTGCTTTAGGGAAGTATACATTTACGGATATAAATTTAGGAAATGAACAGATAATCAGTGCTACCACTCCATGTGCTGACTTTTTCTTCCGAAGCTGCCAATCTACAGAGTCAAAGAAAACTGTGCTGTCTGGGCAGCCTGCACACGTGTCATCAAGGTGGCAGAGCAATGATGTAACAAAGGTGGTGCGCAACTGCAATGAAGTGGATCTCAATATCATTGTGCTTTGGAAGGCATATGTAGTTGAAGACAACAAGCAACTGATCTTAGAAGGTCAACTCCATGTAGCTCTTCAGACCATTGGAAATGAAGTGTGTTCCTTGTCACAAAAGCAGGAAGCTCAAGAGATGGTGTTGCTTAAGTTTATCAGGCCTGAACAGCCACCTTCACTAGCAAGACCATCTATGGAGCAACTGTCTCATCTAATAAAGACGAGCCTTCGTTACCCTGAGTCCTACGATCATCCATTTCTACAGAAGAGCCCTGAAACATTAGAAGTCCATGGCTCTTTTACTTGGCTTGGGAAGACTCAGTACAAACTCCAGCTTAAAGCTCAGGAAATTCAGAAGCTTCAACTCAAAGCCTGTTTCATCCATGCGGGGGTCTACAATCTGGGAACACCTCGGGTTTTTGCGAAGTTGACAGACCAAGGTTCGATGTGCGAAACTAGCCAGCAGAACTCTATGCCAGCATTGATCATAATCAATAGTGTCTGAACTAACCTTAGGATCTCAACTCAGACGAATACTGGAAACAAACTGTTTTGTACTTCTTAAAAATTCCTGCATAAGATGTGCTTGTATAGATTGCAATTGCAAGATCTtaaataaacagttattttaCGTCTCAACTGCAAAGCATTATGGACTTTTAAGTgtgtatgtaatttttttttttttctttcagcatATATATCTTTCATCTTGGCTTGTAACTAGTCTTTTTTTATAACAGATACTACAAATATTTACACCTGGGGGGAGAGTGGACAGCACAGTTTTAGTCTGTATGAATTTGTCttccacagttttttttttttctgtttgtggcTGCTTGGAGTTTAAAGGTAACATGATGCGTCTGACTGCACTAAAACAGGCCAATGATGTGGTGGGTCACTTCTGTGCTACATGTGATCCATAGTTCTATCAAGTAAAGGCAACTACAGTAGTAATGTTCAATTTGGttgcattatattttacttcTTCATAAAACCTGTAATCGAAAATTACAAGTTATTTAAATCGTGATCCTAAATCAGGCTTTaaaaggggggtggggtggggtcaTATAACAACTGCAGCCTTTGATAAAAAGTCAACCTCAATACATTGCTGAAAGCTGTGCTGTTTTCACaagcacattattttaatgttctttaaacaaatcatttccTTAACTGTGTATCTTGACCATTTGATTAagctgttatttaaatgtatctacaCGACTGCTTTTCAGAAGatgatgtattatatttataacaaatttactgtaa

Function

GO: NA

KEGG:

id description
K20305 TRAPPC8, TRS85; trafficking protein particle complex subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019328 True 5134 mRNA 0.44 28 14837230 14895216

Neighbor

gene id symbol gene type direction distance location
AMCG00019330 NA coding downstream 54680 14776808 ~ 14782550 (-)
AMCG00019326 b4galt6,LOC104925469,LOC106560385 coding downstream 105583 14720859 ~ 14731647 (-)
AMCG00019327 NA coding downstream 198998 14616919 ~ 14638232 (-)
AMCG00019320 cdh2 coding downstream 657516 14152717 ~ 14179714 (-)
AMCG00019319 NA coding downstream 1012602 13817357 ~ 13824628 (-)
AMCG00019329 LOC107559729,LOC107553429,LOC104958571 coding upstream 31485 14926701 ~ 14937229 (-)
AMCG00019332 NA coding upstream 98592 14993808 ~ 15000069 (-)
AMCG00019333 klhl14 coding upstream 108236 15003452 ~ 15018066 (-)
AMCG00019334 klhl14,LOC106599787 coding upstream 135137 15030353 ~ 15031231 (-)
AMCG00019335 NA coding upstream 243086 15138302 ~ 15153516 (-)
G33206 NA non-coding downstream 118997 14714791 ~ 14718233 (-)
G33204 NA non-coding downstream 138818 14692705 ~ 14698412 (-)
G33132 NA non-coding downstream 755312 14081715 ~ 14081918 (-)
G33092 NA non-coding downstream 1203728 13633286 ~ 13633502 (-)
G33076 LOC104962440 non-coding downstream 1525430 13311503 ~ 13311800 (-)
G33268 NA non-coding upstream 166558 15061774 ~ 15062351 (-)
G33282 NA non-coding upstream 266496 15161712 ~ 15161967 (-)
G33285 NA non-coding upstream 287564 15182780 ~ 15184537 (-)
G33291 NA non-coding upstream 358816 15254032 ~ 15256023 (-)
G33393 NA non-coding upstream 962961 15858177 ~ 15931208 (-)
G33163 NA other downstream 278940 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 1172000 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 1648938 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 2413910 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 2951659 11852108 ~ 11885571 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other upstream 56626 14951842 ~ 14991996 (-)
G33381 ube2v2,LOC107732116 other upstream 797266 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 3489651 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 4399596 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 4547179 19442395 ~ 19454969 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_01560871_01627451 TRAPPC8 coding CI01000051 null 1560828 ~ 1627665 (-)