AMCG00019344


Basic Information

Item Value
gene id AMCG00019344
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15566655 ~ 15581014 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019344
ttcccaagaatgtacattttaaattacattttaatggttttaattagaTTTCAGAAGTTCTGCTTTTGGATGTGTAAGTATATAGGTTTAATTAAACTACCACACCGTTTCAGAAAATAAGGGAACAAGCTCCATATGATAGGCTATATTTGCTAATCATCCAAGTGGTATcatacagaaaaacaagcatTCCATTATTTGAGAGATGGTTAAAATAAGGTCTGTTTGGTGGCTGTCTCTTGCATCgcattgtgtgttttggtgtCAGCTTACATTGTTTCCCTAACTGATGAAAGAGACTCAGCACATGCATTGTTTTCAGACATGTACATAAATTATGCTTAGAACTACGGTTTCACTAGAAAGTATAACATATGTCATGTTCCAGTGATCATTCTCCCATCTACCTCTTAGGagtgttcatttttttcttatacacATATTGTAGgataaatataatgtttcaataatgtaaaatgGTGTTTTAAGAATAGAAACATTCTCCTGCAGGTTGCAGATGCTGAAATCTCAGAGTTTTCTTCTGATGGGGAGAGTGTGGTGTCCAGGTCCCAGGCCAGCACGGCTCAGCCCCAATCACAGCCATGCCAGGCCAGTGGAAGGTCTGCCAGTGACTGGGTCAGGTCTGCTCAGGCTCTGCTGCAGACGCCTCATAAACAGGCCGACAGAAAGTTCAAGACCCCAGAAGATTCTgccaagaagaaaaacaaattcctGAGGGGAGGCCTGGCCGAGCGACTCAGTCGGCTGCAGTGCAGACAGAGGTCTGCCATCAGCTTCTGGAGGCATCAATCACCTTCAGCCAGTAAAACCCCGGCAGTGTGTAAAGCTGGGGTACTGGTTCTGCAGGTGCTGCAGGTTTGGGAGGAGGGCTCTGTTCAGGTTGCCCTCTGCCAGCTGTTTGAGCAGCCCTCTCCAGATGGCAGCGCCCGCAGTCCCTTTCCCTCTGCCGAGGCCCGGCTGCAGGTTCTGTTCAGCAGAGACACAGCCACCCACCTAGTGCCACGTCCTACAGACATTGTACATGTGTACCCCCCATGGTTAGTACCCATTTACCTCTCTCTTGCAtttactatataaataaaaagtgggTTACACATTCGTTCAGATGTAGATGGCAATTGTTGTCATCTATATTCATATTGTACTGATGAAAATCAGTAAAGCACTAAATGTGATATCTTCCATCTTGCTCTGTAATGGTTcatctttctttaaattatttgggattgttttcattctgtaaGTGTCTTAGCCCATTGAACTAAATGATGTAAAGCACTTGTACTATTGTTAATTTTGCAATAGAATAGTCACACCATCATAGTATTGTAAGTAATGACTGAGTGAAAAtagtgatgtttgttttttgtcccaCCAAATGtgtattcttatatattttgtatacttccatctatataaaaaaagcttGATTAACAAAGTGTAAAAGATGAGTTGTagataaagataaagaaaaatggTCTTGGCAGTTAGATTATACAAGTTTAAAGCTGTCCGTTGTTAGaggttatttttcttccctctttGCCGAACCCTTCATATAAAAAATAGGACAAACCCTTTCCTtaattgtctatttttattttttttaacctgattTCTTGAATGTTTGCCTATTTTTTTGCTTTACTCAAACAGGTCTTATCTGTGCACATTGTAATTTTAggcataaatgaataaacagtaCAAATGTATGTAGCAAGATTTTACACCCAATTGTGTAGgctaaaaataaattgactaTTTAACTTGCCTTTTTCTTTATACTTAATTAAATCTGTTAGCATGGATTATTCAGTAAATGCTATTGTTTTCCTTATGTTTGTATTCTGATTAAGTACAAAGTTATTTCTTctcccttttttttgtttaaattgactCTTAAAAGTAGGCCCCCTCTAatgattatttcattttttcatagtTAAGCGATGTTTGTGGCATCCCTATTGGCAAATCATGTTAGGTTTAATACCTTTGTAATCAGTTTACCAGTGTAATAGTATACAAATGTTGCCATTGCTCCCATGCAATATCTCTTGGGgcttcattttgtttatatttctccAAACAAAGCAGTAACCCATTCCCTGAATTATGCTACACTACATGAATGAGATTGTGCAAAGAAAGGAAACTTTAATAAACTCGATGTCTTGACAAAATAGTTGTACTTGACTCCTGCAG

Function

GO: NA

KEGG:

id description
K22806 SPIDR; DNA repair-scaffolding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019344 True 2226 mRNA 0.38 3 15566655 15581014

Neighbor

gene id symbol gene type direction distance location
AMCG00019347 mapre2 coding upstream 36744 15520426 ~ 15529911 (+)
AMCG00019342 NA coding upstream 86919 15436315 ~ 15479736 (+)
AMCG00019336 NA coding upstream 311258 15240522 ~ 15255397 (+)
AMCG00019337 NA coding upstream 337879 15219221 ~ 15228776 (+)
AMCG00019323 NA coding upstream 621428 14938940 ~ 14945227 (+)
AMCG00019346 mcm4,LOC106569128 coding downstream 100890 15681904 ~ 15688849 (+)
AMCG00019350 ub2v2,ube2v2 coding downstream 112028 15693042 ~ 15705080 (+)
AMCG00019353 NA coding downstream 348861 15929875 ~ 16130440 (+)
AMCG00019354 sntg1 coding downstream 659368 16240382 ~ 16266099 (+)
AMCG00019365 NA coding downstream 912453 16493467 ~ 16856282 (+)
G33307 NA non-coding upstream 33459 15484078 ~ 15533196 (+)
G33161 NA non-coding upstream 1074449 14491892 ~ 14492206 (+)
G33153 NA non-coding upstream 1280639 14285565 ~ 14286016 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding upstream 1405952 14152802 ~ 14160703 (+)
G33093 NA non-coding upstream 1928484 13633702 ~ 13638171 (+)
G33392 NA non-coding downstream 347555 15928569 ~ 15931201 (+)
G33404 NA non-coding downstream 421782 16002796 ~ 16003201 (+)
G33408 NA non-coding downstream 519944 16100958 ~ 16101159 (+)
G33422 NA non-coding downstream 785100 16366114 ~ 16366342 (+)
G33444 NA non-coding downstream 907857 16488871 ~ 16491053 (+)
G33283 NA other upstream 396814 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 1079949 14439253 ~ 14486706 (+)
G32539 NA other upstream 5157158 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 5937993 9369898 ~ 9628662 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 6217836 9329479 ~ 9348819 (+)
G33406 NA other downstream 462928 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 1868306 17449320 ~ 17452659 (+)
AMCG00019402 NA other downstream 3424010 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 3704522 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 3870233 19451247 ~ 19455137 (+)

Expression


Co-expression Network