AMCG00019345


Basic Information

Item Value
gene id AMCG00019345
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15554819 ~ 15626955 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019345
GCTTTGCCTCCTGGTCCAGGATGTCTATGGGATGTTCAGTGAAGTCCAGCTCCACACTTTCCACTCAATCGAAGACACCCTTCAGCAGTACAGCAGGAAGTGGGAGGGTAAACCTTGCATTCTGAAGTGCATGAGAGTGGTACAGAGGACCACACGTGGGAGGTCGATATGGCTCTTTAATCTCATTGACAGCTTGTGGCCTCCACTGGTGCCTCTGAAAGTGCTCGGAAAAAGTCAGGAAAGTCCAGGGGACAGTGGCAGTCTCCCTGCTCCCAGTTTCTCTTATGTGCTCTCTGCCCAGCGAGACGAGGGCACTGTGGAGGAGCTCAAGGAGGAGGCCCTGCAGGCTCTCTACTTGCCCCCTGTGGTGCACACCCTCCAGGAGATCCTGCAGAGTGTGGAGCCAGGGCAGGGTGAGTTCTGGTTGTTTGTGACGGACTCCAGCCTGCAGTCTGAGGAAGATAACCGTCTGAACTGTTGCAGAACAGTGCCAGTGCGAGTGACAACTTCATGTGTGCTTGGCTCAGCTGTCATGCAAGCCCTCAAGAGTGCCTCCTCCTGCAGTCTTGCATTTAAAGATGTTGTAAAAGAACGTGATACTGTCCTGTGTGTGGAGCGCACTGTACTGGAGCCGCAGCTATGTGTGTTGAGTGCCGATAGCACAGTGAGCCCAGGTCGTCTGCCTGAGCTAGTGAAACTGGATGAACTGGATCCAAAAACTAAAGCCAACACTCTGTGTGTGGTGAAAGGAGTTGTGGTCGGGGTTGATGAGAGCAAGGCCTATTCTTGGCCGGTATGCTGTTGGTGTGGGAATGAAAATCTAGATGCCTCAAACATGGAACAACAAAGATTTTTCTGTAGTCTTTGTGTCACCACAGTAGACAGGCCTACCATGAAAATGCAACTTGAAGTCTTCCTACACTGTGATTCATACAGTCAGTGCACTGTGAAAGTCAAgAATGGCATATGCATTCCTGTGATTGTGTTAACTGGCCTTCTGGTGTCGTTCCAGGGTTATGAGGTGGAGAATGTACTGGGGAAGGCGGTGGGCCCCCTGACTGGTTATGTTCATGTTGTAACAAGGGAACCAGCAGCCTGGATTGGACTGGAAGAAATCACCCTC
>TU41764
GTGGCAAtgatGGTTATGAGGTGGAGAATGTACTGGGGAAGGCGGTGGGCCCCCTGACTGGTTATGTTCATGTTGTAACAAGGGAACCAGCAGCCTGGATTGGACTGGAAGAAATCACCCTCTGAACAGGCAGAAACCCAGGAAGTGTTACTGAGAAATTGCCCTGAGCTATAAGACCTAATAGTGAGGTTGCTTCAAAACTgcaagagggggaaaaaaaatattgaaacagCATGAATCTATTTATGCGGTATGAGTTCCTTGAGATGTGACTGAAATAGAGTTGAAGAGTGAAGTTCAATAGTGTTTTGATATTGGACACTGCTTCTCATTCCCGCCATGTGATTATGCACATGTTGGTGTTGTTAAATGTTGTTCTAAAGTAACACTATTTCTGTTTGCAGTCTTCAAACACTGGCTTTATGACAGCTTGGAGGTTTGCCTTCCCTGTAAATCTACCTCATTGTATATGTTTGTAAAAAGATTTTGTGATGCCACTAAAGATTGTCCCCTGTGGTTATTATAGAAAAGATGTGCAGACAAAATGTCAATAGGATATTTGCTGTGTACATCATTATAATCTTGTAATAATCCAGTGTAATCCAGTGTAGTGAGTCCACAGAAAGCCTAATATGGAAAATTAAATCcaggtatttgtttaaatagcTGTGctactgtattatgtatttcaaagtCTCCATTATACCACTTTCACACCTGTTGCATACCCTTTAGCAAACTAAactttggagagaaaaaaaaaaaacgtgttcttgttagggttttgttttggctCTATGAACCAGAGTAAGTGAgacattgatttttttgttttccttctttcaaTGATATGGCCAGTCTATATTTGGAGAAATTTTCCGGCTTTCTGTGATCAGATTTGTCAGCAGTGGGAGAACTGgaggtgtttttctgtttttcaatccTTAGTTGTTTTATTGCCATTGACTGACAGATGCTGGTTATCGGTTTATCTGTGAACTTCCTCCCCTAAGTTTGTAGGTGGTGAGTCCTTAAAGAGTGGATCTGTAACTGACAAATAAGATGATTTGCTTTTACTACAATGTCTGAACTGTTTATGAGGGCTCTGAAAAGCTAATaaactgtgttgtgtttcaaatgtcctaataaatgtatatgcaaaGTCATTACAACTTtgataaa

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko05166 Human T-cell leukemia virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019345 False 1123 mRNA 0.51 8 15605867 15625895
TU41764 True 1182 lncRNA 0.38 2 15554819 15626955

Neighbor

gene id symbol gene type direction distance location
AMCG00019347 mapre2 coding upstream 24908 15520426 ~ 15529911 (+)
AMCG00019342 NA coding upstream 75083 15436315 ~ 15479736 (+)
AMCG00019336 NA coding upstream 299422 15240522 ~ 15255397 (+)
AMCG00019337 NA coding upstream 326043 15219221 ~ 15228776 (+)
AMCG00019323 NA coding upstream 609592 14938940 ~ 14945227 (+)
AMCG00019346 mcm4,LOC106569128 coding downstream 54949 15681904 ~ 15688849 (+)
AMCG00019350 ub2v2,ube2v2 coding downstream 66087 15693042 ~ 15705080 (+)
AMCG00019353 NA coding downstream 302920 15929875 ~ 16130440 (+)
AMCG00019354 sntg1 coding downstream 613427 16240382 ~ 16266099 (+)
AMCG00019365 NA coding downstream 866512 16493467 ~ 16856282 (+)
G33307 NA non-coding upstream 21623 15484078 ~ 15533196 (+)
G33161 NA non-coding upstream 1062613 14491892 ~ 14492206 (+)
G33153 NA non-coding upstream 1268803 14285565 ~ 14286016 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding upstream 1394116 14152802 ~ 14160703 (+)
G33093 NA non-coding upstream 1916648 13633702 ~ 13638171 (+)
G33392 NA non-coding downstream 301614 15928569 ~ 15931201 (+)
G33404 NA non-coding downstream 375841 16002796 ~ 16003201 (+)
G33408 NA non-coding downstream 474003 16100958 ~ 16101159 (+)
G33422 NA non-coding downstream 739159 16366114 ~ 16366342 (+)
G33444 NA non-coding downstream 861916 16488871 ~ 16491053 (+)
G33283 NA other upstream 384978 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 1068113 14439253 ~ 14486706 (+)
G32539 NA other upstream 5145322 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 5926157 9369898 ~ 9628662 (+)
G32286 NA other upstream 6015608 9261374 ~ 9539211 (+)
G33406 NA other downstream 416987 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 1822365 17449320 ~ 17452659 (+)
AMCG00019402 NA other downstream 3378069 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 3658581 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 3824292 19451247 ~ 19455137 (+)

Expression


Co-expression Network