AMCG00019349


Basic Information

Item Value
gene id AMCG00019349
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15628489 ~ 15630001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019349
ATGCAGCTGCAGGCGCCGCGCTGGATTGATATTGCCCGCTTTCTGTTCGGCATCCCCGCTGCACAGGTGTCTGACCTCCGGGTGCGAGTTGTGAAGCGACACAGCCAGCCCCCGCCTCACCGAAGCGCGGCTCCCGACCCGGGCGAGCCGGCTGCCATTCGCGCAGAGGAGCAGACCACAACTACGTTCATGAGTGTGATATACAGCCTGGACTCCCAGTGCGTCTCTCCACCATGCGCTATGAAGTGGGCCATGGAGCCGGCCAATTTCTACGAGAGTAAGCCAAGCTCGGTCCAGGGCTCCTGCAAGCCCGGCCGAGGCGCTGGCACCGGCATGGGCGAGGAGAGCAGCCTGGCAGAGCTCAGCACCGCCCAGGCCATGTACGACGACGAGAGCGCCATCGACTTCAGCTCCTACATCGACTCCATGCCCTCCGTGCCCAACCTGGAGCTGTACAACGACGAGCTGTTCGCGGACCTGTTCAACAGCAGCGTGAAGCAGGAGAAGACGGACTTCAACTACCTGCACCTCCAGCAGGGCTCCAGCGCCGCCGCGGCCCCTGCCAGCCACCCGAAGGACTTCGCCGCCAAGCAGGACGGCAGGCGGGTCAAGGGGGTGTTCAGCGCCCCCCTCAAGCAGGAGTCGGACTGGAGTGACAGCGACATgtcctcctccctgccctcgCAGATCGAGACCTGCGCACAGACGGCGGTGAGTCTGCACACCGGCCAGCCCACCCCGCCCACCACCCCGGAGCCCTCCTCGGCGCACCCCGGCTCCAGGAAGAGCGGCCGGGACAAGGGCAAGAAGCATGTGGACCGGTACAGCCCCGAGTACCGCCAGCGCCGGGAGAGGAATAACATCGCGGTGCGGAAGAGCAGGGACAAGGCGAAGCAGCGCAACTTGGAAATGCAGCAAAAGATGATTGAACTCGGGGCGGAGAACGaccggttgcataaaactatcgAGCAGCTCAGCCGGGAGCTCGCCAGCCTCAGAAACTTCTTCAAGCAGCTCCCCAACTCCCCTTTCCTGGGATCCAACAGCTCCGACTGCCGGTAA

Function

GO: NA

KEGG:

id description
K10050 CEBPD; CCAAT/enhancer binding protein (C/EBP), delta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019349 True 1062 mRNA 0.64 2 15628489 15630001

Neighbor

gene id symbol gene type direction distance location
AMCG00019343 NA coding downstream 77461 15533235 ~ 15551028 (-)
AMCG00019340 NA coding downstream 268421 15359700 ~ 15360068 (-)
AMCG00019341 NA coding downstream 269826 15358008 ~ 15358663 (-)
AMCG00019338 NA coding downstream 285215 15337671 ~ 15343274 (-)
AMCG00019339 NA coding downstream 314372 15305923 ~ 15314117 (-)
AMCG00019348 NA coding upstream 2481 15632482 ~ 15681330 (-)
AMCG00019351 snai2 coding upstream 233786 15863787 ~ 15864856 (-)
AMCG00019352 NA coding upstream 358162 15988163 ~ 15988928 (-)
AMCG00019356 NA coding upstream 760376 16390377 ~ 16421282 (-)
AMCG00019355 pcmtd1,LOC107732114,LOC107717289 coding upstream 824739 16454740 ~ 16474345 (-)
G33291 NA non-coding downstream 372466 15254032 ~ 15256023 (-)
G33285 NA non-coding downstream 443952 15182780 ~ 15184537 (-)
G33282 NA non-coding downstream 466522 15161712 ~ 15161967 (-)
G33268 NA non-coding downstream 566138 15061774 ~ 15062351 (-)
G33206 NA non-coding downstream 910256 14714791 ~ 14718233 (-)
G33393 NA non-coding upstream 228176 15858177 ~ 15931208 (-)
G33419 NA non-coding upstream 642066 16272067 ~ 16311866 (-)
G33461 NA non-coding upstream 988301 16618302 ~ 16618691 (-)
G33531 NA non-coding upstream 1414017 17044018 ~ 17044239 (-)
G33532 rgs19,rgs20,LOC103135694 non-coding upstream 1419513 17049514 ~ 17049746 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 636493 14951842 ~ 14991996 (-)
G33163 NA other downstream 1070199 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 1963259 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 2440197 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 3205169 12413154 ~ 12423320 (-)
G33381 ube2v2,LOC107732116 other upstream 62481 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 2754866 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 3664811 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 3812394 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 5113529 20743530 ~ 20765496 (-)

Expression


Co-expression Network