AMCG00019351 (snai2)


Basic Information

Item Value
gene id AMCG00019351
gene name snai2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15863787 ~ 15864856 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019351
CTGCCGCTACAGCACTGCGCTGCACCATGACCCGCCGCTGGACTGTGCAATAGGAAAGAGTGAGGCTGCAGTGATTTGTTACACAAGAAGGGCTGGGACCGTTAtatttatacactttttttctttttgtacatCTCAAGATCACTGAgctatttatttcttttcaagATGCCACGTTCGTTTCTGGTTAAGAAACACTTTAACTCCGCCAAGAAGCCAAATTATAGTGAACTGGACAATCCTACAGtgtttatttcacCCTTTCTGTACAAGGGCTACCCAGTGCCTGTCATCCCGCAGCCAGAGATCCTCAGTTCAGTAGCCTACAACCCCATTACAGTATGGACTACGAGCAGCCTGCCATTAACCCCTCTGCCCAACGACCTCTCCCCCATCTCCGGATACCCCTCGTCCCTGGGACGGGTCAGTCCACCACCCCCCTCTGACACTTCTTCCAAAGATCACAGCGGGTCCGAGAGCCCCATCAGTGACGAGGATGAGAGGATGCACAGCAAGATCACAGACCCGCACGGCGTGGAGGCGGAAAAGTTTCAGTGCAGTTTGTGCAACAAGTCGTACTCCACGTACTCCGGATTGCTGAAACACAAGCAGCTGCACTGTGATGCTCAGACAAGGAAATCTTTCAGTTGTAAATATTGCGAGAAGGAGTATGTGAGCCTCGGAGCCCTTAAGATGCACATCAGGACCCACACTTTGCCTTGTGTCTGTAAGATCTGTGGCAAAGCCTTTTCCAGACCCTGGTTACTGCAGGGACACATCAGGACGCACACCGGTAAGAGTCTATTGAAAGTAATGACGGGCTAG

Function

symbol description
snai2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Is expressed in several structures, including cardiovascular system; ectoderm; mesoderm; neural crest; and splanchnocranium. Human ortholog(s) of this gene implicated in Waardenburg syndrome type 2D and piebaldism. Orthologous to human SNAI2 (snail family transcriptional repressor 2).

NR:

description
zinc finger protein SNAI2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K05706 SNAI2, SLUG; snail 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019351 True 825 mRNA 0.50 2 15863787 15864856

Neighbor

gene id symbol gene type direction distance location
AMCG00019348 NA coding downstream 182457 15632482 ~ 15681330 (-)
AMCG00019349 NA coding downstream 233786 15628489 ~ 15630001 (-)
AMCG00019343 NA coding downstream 312759 15533235 ~ 15551028 (-)
AMCG00019340 NA coding downstream 503719 15359700 ~ 15360068 (-)
AMCG00019341 NA coding downstream 505124 15358008 ~ 15358663 (-)
AMCG00019352 NA coding upstream 123307 15988163 ~ 15988928 (-)
AMCG00019356 NA coding upstream 525521 16390377 ~ 16421282 (-)
AMCG00019355 pcmtd1,LOC107732114,LOC107717289 coding upstream 589884 16454740 ~ 16474345 (-)
AMCG00019357 NA coding upstream 642782 16507638 ~ 16552225 (-)
AMCG00019358 NA coding upstream 851509 16716365 ~ 16760441 (-)
G33291 NA non-coding downstream 607764 15254032 ~ 15256023 (-)
G33285 NA non-coding downstream 679250 15182780 ~ 15184537 (-)
G33282 NA non-coding downstream 701820 15161712 ~ 15161967 (-)
G33268 NA non-coding downstream 801436 15061774 ~ 15062351 (-)
G33206 NA non-coding downstream 1145554 14714791 ~ 14718233 (-)
G33419 NA non-coding upstream 407211 16272067 ~ 16311866 (-)
G33461 NA non-coding upstream 753446 16618302 ~ 16618691 (-)
G33531 NA non-coding upstream 1179162 17044018 ~ 17044239 (-)
G33532 rgs19,rgs20,LOC103135694 non-coding upstream 1184658 17049514 ~ 17049746 (-)
G33533 NA non-coding upstream 1185141 17049997 ~ 17054332 (-)
G33381 ube2v2,LOC107732116 other downstream 142335 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 871791 14951842 ~ 14991996 (-)
G33163 NA other downstream 1305497 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 2198557 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 2675495 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 2520011 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 3429956 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 3577539 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 4878674 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 6805791 22670647 ~ 22744182 (-)

Expression


Co-expression Network