AMCG00019356


Basic Information

Item Value
gene id AMCG00019356
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16390377 ~ 16421282 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019356
TACCTGTACAAAAATGAAATCCAATCACTGgacaaacaagcatttaaagGTTTACATTCTCTGGAGCAGCTATACATTCACTTCAACCACATAGAAACACTACAGGCAGACACATTTAGTGACCTTCCCAATCTGGAAAGATTATTTCTTCACAATAACAAACTCTCCAAAATCCCGGCTGGAACCTTTGATCATCTGGAATCTATGAAGAGACTTCGATTGGACTCCAATGGCCTAATATGTGACTGTGAATTAATCTGGTTGGCCGAATTGATGAAGGAATATTTGAAGAATGGCAATACTCAGGTAGCGGCTACTTGTGAGCATCCCAGACGGTTGCAAGGCAGGTCTGTTGCTACAGTAACAGCAGAGGAGTTCAATTGTGAGAGACCACGAATCACCTCTGAACCCCGGAATGCTGATGTCACACTGGGCAATACAGTCTATTTTACTTGCAGAGCAGAAGGCAATCCCAAACCTGAGATTATCTGGATTCATAACAACAATGAAATTGATATGCGGGATGACATCAGACTGAACCTGCTGAATGATGGCACACTGATGATTAGGAACACCAGAGAGTCTGACCAGGGGACGTACCAGTGCATGGCCAAGAATGTGGCAGGAGAGACAAAGACTCAGGGAGTGGTTTTAAGATATTCTGCGACCCCATGTGATTTTGTGATACAGCCTCAAAACACAGAGGTACTTCTTGGTGCCAGTATCACACTGGAATGCAGCGCGATAGGGCATCCCCAGCCACGCATCACCTGGTCAAGACGGAACGGAAGTCTACTCAGCAATTCCTCTCAGTACATTATCACATCATTAGGGGGCCTCTTTATTCAGAATGTCACATTAGCAGACCACGGAGAGTTTATCTGCCATGCCAGCAATAGTCAGGACTCCATTCAAGCGTCAGCACGCATCATTGTGCAAGCTCCTCCCGTGTTTACTGTGATTCCCAGTGATCAGGCTGTGATAGAAGGCCACTCAGTGGACTTCCCATGTGTAGCTGTTGGCAATCCTATTCCAGTCATCGCTTGGACTAAAGCAGGGGGCCAGCTGCCCAGCGACAGAAGGCACGCCGTGTTGTCATCAGGTACCCTGAGGATCATTCATGTGGCCCCTCATGATCAGGGCCAGTACGAGTGTCAGGCTGTCAGTGTGGCAGGAGTGAAAAGATTGCCAGTGCAACTGACTGTGACGCCCAAAGATGCTACAACTGAAGTCGGGCAAGATGTGCAAATTCCATGTAGTGCTCTCGGAGAACCTCACCCTACCATAACCTGGACAAAGGATGGTGTTCAGATCACTGAAAGTGGAAAGTTCCATGTCAACTCTAATGGGCTCCTCACTATCAGAGATGTCGGTCAAGCAGACAGGGGCCGATATGAATGTGTCGCCCGGAATGCCATAGGCCAGTCATCCTCTAGCATGGTGTTAAGTGTCAGAGTTCCAGAAGGAAGACGTGCCGGAGACAGTTTTGTGGAACCATCAATTCATGATGCAACCCAAAGAGTGGACAGTGCAATAAATTCCACACGCAGAGATCTATTTGACAAGCGTCCTCGGACACCTAATGATCTGCTAGCTCTGTTCCGCTACCCAAGAGACCCTTTCACCATTGAAACTGCTAGAGCTGGAGAGATTTTTGAACAGACACTGCATCTTATCCAGGAACATGTGCAGCAAGGGCTGACTGTTGACCTGAATGGGATAGaGTTCCGCTACAATGACCTGGTCTCACCACACTACCTGGACCTCATTGCCAACCTCTCTGGATGCACTGCGCACCGACGCTTCCCAAACTGTTCTGACATCTGCTTCCATCAAAAGTATAGAACCCATGATGGCACCTGTAACAACCTTCAACATCCCATGTGGGGCTCTTCTCTGACGGCCTTTGAAAGAATACTGAAGCCAGTATATGAAAATGGTTTTAGCTTACCTAGAGGGGTTGGGCGTGATGCAAAATACAATGGTCATCCATTGCCAATGCCCAGGCATATCTCCACTTCAATGGTTGGCACAGAGGCAATAACTGCTGATAACTCTTTTACACACATGCTCATGCAGTGGGGTCAGTTCATGGACCATGATTTGGACCAAACTGTTGCGGCCCTCAGTATGTCCCGCTTCTCAGATGGTAAACCCTGCAGCTCCGTGTGCACAAATGACCCACCCTGCTTTCCCATCATGGTCCCTGAAAATGATCCCCGTGTGAGGAACGCTAGGTGCATGTTCTTTGTGCGATCCAGCCCAGTATGTGGCAGTGGAATGACCTCAGTCCTTATGAACTCAGTATATGCCAGAGAACAGATTAACCACCTGACTTCCTATATCGATGCCTCCAATGTATACGGAAGCAACAAGCGGGAGTCTGATGAACTCCGGGACTTCTCCAATCAAGGTGGCCTCCTGCAGCGAGGTATGGAAGTAGGAAGTTCTGGAAAACATCTACTGCCCTTTGCCAGAGGACCGCCCACAGAGTGCATGCGTGATGTGAACGAAAGCCCTATTCCGTGCTTCTTTGCTGGAGACTATCGTGCTAATGAGCAATTGGGCTTGACTGCCATGCACACCGTGTGGTTCAGGGAACATAACCGCATTGCAGAGGAGCTATTGAAACTCAATCCCCATTGGGATGGAGACACAGTCTACCATGAATCCAGAAAGATTGTAGGTGCTGAAATGCAACACATCACTTATCAGGATTGGCTGCCAAAAATCTTGGGGGAGGTGGGTATGAAACTTTTGGGGGAATATAAAACCTATAATCCAAATGTGAATGGAGGCATACTTAATGCTTTTGCTACAGCAGCTTTCAGATTTGGACATACCCTAATTAACCCGATTTTGTATCGCTTGAATGAAACCTTTGGGGAGATCCCACAAGGTCACATTCCCCTCCACAAggcctttttttctccttataGGATTGTTCAGGAAGGAGGTATAGATCCCATCTTGCGTGGTCTCTTTGGGGTGTCTGGTAAGATGCGTGTTCCTTCTCAACTTCTAAACATGGAGCTAACAGAGAGACTATTTTCTATGGCTCACTCGGTGGCACTGGACTTGGCAGCTATGAATATTCAGAGAGGTCGAGATCATGGCATTCCACCATACAAGGACTATAGGATATTTTGTAATCTTACTGCTGTCCAGGACTTTGAGGACCTAAAGAACGAGATAAAAAACCCAGAAATCAGAGAAAAGTTGAAAAAgtTGTATGGAACACCTGTAAACATTGACCTTTGGCCTGCTTTAATGGTGGAAGACCTGATTCCTGGAACAAGAGTGGGACCAACTCTCATGTGCTTGTTTGTCACACAATTTCAAAGACTAAGGGATGGTGACAGGTTTTGGTATGAAAACCCAGGGGTATTCAGTCCATCACAACTCACACAGCTCAAACAGACCTCTTTGGCACGTGTTCTGTGTGATAATGGGGATAACATTAAAGAGATTCAGTCTGATGTCTTCTTGAAAGAAGATTATCCTCAAGGGTATTTGAACTGTGAAGAGATCCCTAAAGTTGACCTAAGAATGTGGCAAGATTGCTGTGACGATTGCAGAACCAGAGGACAGTTCAATGCATTATATCAACACTTTCACCATAAACGATCAGCAGACTTTAGCTATCCAGAAGAAAGGAATTTCGTCTGGAACAACAACAATCCAAAAAGattacAAGACAGcacaaaaccagaaaacaatTCCACTGATTACAATGAGGAAAGAAATGGATCTGCAGATCAGGATTTCAACAACTTTATAACTGAAGTAAAAAACACAGTTTCATCTTTAAAGGACCAGATATATAGACTGGAAGCCCGTCTAAGGAAGGATAGCTGCATGGATGAGAGTGATATGCGCAGGAGAGAAGGTGAACAGTGGCAAAAGGATTCATGCACAAGCTGTTACTGTCAGaAAGGACAGATTACTTGTCTGGTAGAAACCTGCCCTGAAGCAGACTGCAAGAACCCTATAAAAGTAAAAGGAAGATGTTGCCCTGTTTGTGCTGcagacaaaaatagaaatgaatcT

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K19511 PXDN, VPO1; peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019356 True 4050 mRNA 0.46 20 16390377 16421282

Neighbor

gene id symbol gene type direction distance location
AMCG00019352 NA coding downstream 401449 15988163 ~ 15988928 (-)
AMCG00019351 snai2 coding downstream 525521 15863787 ~ 15864856 (-)
AMCG00019348 NA coding downstream 709047 15632482 ~ 15681330 (-)
AMCG00019349 NA coding downstream 760376 15628489 ~ 15630001 (-)
AMCG00019343 NA coding downstream 839349 15533235 ~ 15551028 (-)
AMCG00019355 pcmtd1,LOC107732114,LOC107717289 coding upstream 33458 16454740 ~ 16474345 (-)
AMCG00019357 NA coding upstream 86356 16507638 ~ 16552225 (-)
AMCG00019358 NA coding upstream 295083 16716365 ~ 16760441 (-)
AMCG00019359 LOC107677137 coding upstream 370613 16791895 ~ 16843567 (-)
AMCG00019360 NA coding upstream 470456 16891738 ~ 16899067 (-)
G33419 NA non-coding downstream 78511 16272067 ~ 16311866 (-)
G33393 NA non-coding downstream 459169 15858177 ~ 15931208 (-)
G33291 NA non-coding downstream 1134354 15254032 ~ 15256023 (-)
G33285 NA non-coding downstream 1205840 15182780 ~ 15184537 (-)
G33282 NA non-coding downstream 1228410 15161712 ~ 15161967 (-)
G33461 NA non-coding upstream 197020 16618302 ~ 16618691 (-)
G33531 NA non-coding upstream 622736 17044018 ~ 17044239 (-)
G33532 rgs19,rgs20,LOC103135694 non-coding upstream 628232 17049514 ~ 17049746 (-)
G33533 NA non-coding upstream 628715 17049997 ~ 17054332 (-)
G33579 NA non-coding upstream 882176 17303458 ~ 17303696 (-)
G33381 ube2v2,LOC107732116 other downstream 668925 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 1398381 14951842 ~ 14991996 (-)
G33163 NA other downstream 1832087 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 2725147 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 3202085 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 1963585 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 2873530 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 3021113 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 4322248 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 6249365 22670647 ~ 22744182 (-)

Expression


Co-expression Network