AMCG00019362 (lypla1,lypa1)


Basic Information

Item Value
gene id AMCG00019362
gene name lypla1,lypa1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17068638 ~ 17075185 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019362
CATAGCACTAGTAAATTCCCCCACTGATCTTCCCATTAAAACGTCCTACATTCAAGGTCCCCCAGCTCGGGCTGTCGATCTGCCTATCACCAGCAGCCCGGCGGCGCTCCACGCAGCGCGGCACGGAGGGAGGCTTGGCTGACAACGACACCAACCAACAATAGACGCGCCTTTCTGCCCACAGAAACCTGCCTATCAATCGGAAAACAGTAGAGGCGGGATTTCCTAAACGTGCTCCAGTACGAGATACACCAAATGAGATATAGGTTGTTTACCTCACCCTCTTCAAACTTCACAatacattgcattattattagcGGAGCAGAGCGCAGGCATTCCTGGACACAAGGGCTCACGCTAACCTTGACACTGCGCTGTGCATTGCTGGGATGCACCATTGGTTATTCATTTAGAGCCAGCGGAAGATCAGCAAAATCGACCTGCATTACAAAGGGGTACCATCTACTAACCGCGTCTACAGCACCAGTCGTTACATTTTGACGATTTATTCTCTTGTTGGATGTCAGCTGCCCGTCCGTTGTATGTGCGGTAACAATATGTCGGCGCCGCTTCCTGCCATTGTACCCGCCGCTCGGAAAGCCACTGCAGCGGTAATATTTCTTCATGGACTGGGAGATACTGGACATAGCTGGGCAGAGGCATTTGCAGGGATCAGAACTCCTCACGTGAAGTATATTTGCCCCCATGCGCCAATAATGCCGGTTACCTTGAACATGAATATGGCCATGCCTTCTTGGTTTGATATAATTGGGCTTAGCCCAGAAGCAGAGGAAGATGACTCTGGTATCAAACAAGCAGCAGAAAACAttaaagCCCTTATAGATCAAGAAGTGAAGAATGGTATACCCTCACACAGAATTGTTTTGGGCGGATTTTCACAGGGAGGGGCATTGTCTTTGTACACAGCTTTGACAACACAACAGAAACTGGCAGGTGTGGTAGCTCTGAGCTGCTGGCTACCACTGCGCACCTCATTCCCACAGGCAGCAGCCAATGGTGTGAATAAAGATGTGAACATCCTGCAGTGCCATGGTGAGGTGGACCCCTTGGTTCCCCTGGTGTTTGGGTGCCTCACTGTGGAGAAGTTGAAAAGTATTGTCAACCCAGCTAATGTCAGCTTCAAGACATATCCAAGGATGCCACACAGTTCCTGTCCTCAGGAAATGATGGATATCAAGCAGTTTATTGAAAAGCAGCTACCTCCAATCAACTAATCGCACAACAGAGGCCTTTAAATCATACACCAGCACCAACTGAGACTGAATCTAAATCTTATTCCCCCAATACTCTAGAACTCCAAACACATTGTTCTATACCAGCTGTATAATTACCACATTTTGCCTGTTATGCACAGATACATCATTGGGACATGCTGAGAGGTTGTGAAAAGGGAAACTTTATTTTGTAGTCTTTAAACTACTGTAATCACTTCAAGGATTGCAAGGGGCCTACAGTATTTAGGTTGCTAGTGTTTTGTTGCAACTGTTGTGGCTGTAACTGTTTGCTATTAAAGAAGCCATTtcttccaattaaaaacaatgcatttgattatCTAATACAATGTCACATTGGAaatattaatcttttaatttatgTGGATTTACAATAAATGAACATATGACGAAATCTTGAG

Function

symbol description
lypla1 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLA1 (lysophospholipase 1).

NR:

description
PREDICTED: acyl-protein thioesterase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K06128 LYPLA1; lysophospholipase I

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019362 True 1654 mRNA 0.46 9 17068638 17075185

Neighbor

gene id symbol gene type direction distance location
AMCG00019364 tcea1 coding downstream 3957 17055972 ~ 17064681 (-)
AMCG00019363 atp6v1h,LOC107686042,LOC107664082 coding downstream 62500 16987641 ~ 17006138 (-)
AMCG00019366 NA coding downstream 91668 16955890 ~ 16976970 (-)
AMCG00019360 NA coding downstream 169571 16891738 ~ 16899067 (-)
AMCG00019359 LOC107677137 coding downstream 225071 16791895 ~ 16843567 (-)
AMCG00019372 tmem68,LOC106569251,LOC107577454,LOC104952032 coding upstream 251406 17326591 ~ 17345515 (-)
AMCG00019380 NA coding upstream 339021 17414206 ~ 17421484 (-)
AMCG00019378 rs20,rps20 coding upstream 347483 17422668 ~ 17424664 (-)
AMCG00019381 NA coding upstream 363003 17438188 ~ 17440320 (-)
AMCG00019379 sdr16c5,LOC106599159,LOC105008851 coding upstream 384579 17459764 ~ 17477757 (-)
G33533 NA non-coding downstream 14306 17049997 ~ 17054332 (-)
G33532 rgs19,rgs20,LOC103135694 non-coding downstream 18892 17049514 ~ 17049746 (-)
G33531 NA non-coding downstream 24399 17044018 ~ 17044239 (-)
G33461 NA non-coding downstream 449947 16618302 ~ 16618691 (-)
G33419 NA non-coding downstream 756772 16272067 ~ 16311866 (-)
G33579 NA non-coding upstream 228273 17303458 ~ 17303696 (-)
G33584 NA non-coding upstream 238154 17313339 ~ 17315430 (-)
G33586 NA non-coding upstream 240363 17315548 ~ 17320145 (-)
G33603 NA non-coding upstream 250084 17325269 ~ 17326458 (-)
G33637 NA non-coding upstream 355121 17430306 ~ 17434591 (-)
G33381 ube2v2,LOC107732116 other downstream 1347186 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 2076642 14951842 ~ 14991996 (-)
G33163 NA other downstream 2510348 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 3403408 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 3880346 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 1309682 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 2219627 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 2367210 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 3668345 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 5595462 22670647 ~ 22744182 (-)

Expression


Co-expression Network