AMCG00019364 (tcea1)


Basic Information

Item Value
gene id AMCG00019364
gene name tcea1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17055972 ~ 17064681 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019364
GCGGCAGCCGCACTCCGCAGAGCGGCCTCTGGAGAGGGCAGTGAGGGGGAATCCACCGCCAGTGCTCGTCCATCGATTACTCCTGCCTTCCGCCGGGCTCCCGTTGATTGCTTTGGTCTGCTTTGTTTCCAGTGAATGCGCCCGCTCAGCTGGCCGCCGTGTTGTTATCCTAGCAAGAGgggtttttacatttcatatttaccAATTAAACcgacccccccaaaaaaaaataataatataaaaatggggAAAAAGGAGGAAGAAGATATCATAAGGATTGCAAAAAAGATGGATAAGATGGCGCAGAAAAAAAATGGGTCTGGAGCTTTGGACCTGCTGAAGGAGTTAAAGAACATTCCCATGACTCTTGAATTGCTACAATCTACCAGGATTGGGATGTCTGTCAATGCCATTAGGAAGCAGAGCACAGATGAGGAGGTCACATCACTAGCAAAGTCTCTAATCAAATCTTGGAAGAAGCTATTAGATGAGCCAGGAGGAACTGAGAAAGTAtcggaagaaaagaaaaaagagccAACACCACCTACGTCTTCCTCAACACAGAATAGTCCTGAACCTCGAGAGGAAAGCAGCTCGAGCAGCAACTCAAGTAGCAAAAGCGAAGCAGGCGACGCTCCCAGCAACGCACTGATCACCACGTTCCCCCGCGCGCCCAACACTTCCGACTCCGTGAGGCTCAAATGCCGAGAGCTGCTCTCCAGTGCCCTGCAGACCGGGAATGACCACATTGCCATTGGTGCCGATTGTGATGAACTTGGAGCCCAGATAGAGGACTATATCCTTTTGGAATTCAAAAACACTGACATGAAATACAAGAACAGGGTACGGAGCCGAATTGCGAATCTGAAAGATGCCAAGAACCCAAACCTGAGGAGGAACGTCCTCTGTGGAAACGTACCGCCGGACAGGATGGCCAGGATGACGGCAGAGGAAATGGCCAGCGATGAACTGAAGGAGATGCGCAAAAACCTGACCAAAGAGGCAATACGGGAACATCAGATGGCCAAAACAGGAGGCACCCCGACCGACCTGTTCTCGTGTGGGAAATGTAAAAAGAAgaactgtacatacacacagGTTCAGACCCGTAGTGCTGATGAACCAATGACCACGTTTGTCTTCTGTAATGAATGTGGGAATCGGTGGAAGGTGCAGCCACTTCAGTGTTGA

Function

symbol description
tcea1 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Orthologous to human TCEA1 (transcription elongation factor A1).

NR:

description
PREDICTED: transcription elongation factor A protein 1

GO: NA

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019364 True 1191 mRNA 0.50 10 17055972 17064681

Neighbor

gene id symbol gene type direction distance location
AMCG00019363 atp6v1h,LOC107686042,LOC107664082 coding downstream 49834 16987641 ~ 17006138 (-)
AMCG00019366 NA coding downstream 79002 16955890 ~ 16976970 (-)
AMCG00019360 NA coding downstream 156905 16891738 ~ 16899067 (-)
AMCG00019359 LOC107677137 coding downstream 212405 16791895 ~ 16843567 (-)
AMCG00019358 NA coding downstream 295531 16716365 ~ 16760441 (-)
AMCG00019362 lypla1,lypa1 coding upstream 3957 17068638 ~ 17075185 (-)
AMCG00019372 tmem68,LOC106569251,LOC107577454,LOC104952032 coding upstream 261910 17326591 ~ 17345515 (-)
AMCG00019380 NA coding upstream 349525 17414206 ~ 17421484 (-)
AMCG00019378 rs20,rps20 coding upstream 357987 17422668 ~ 17424664 (-)
AMCG00019381 NA coding upstream 373507 17438188 ~ 17440320 (-)
G33533 NA non-coding downstream 1640 17049997 ~ 17054332 (-)
G33532 rgs19,rgs20,LOC103135694 non-coding downstream 6226 17049514 ~ 17049746 (-)
G33531 NA non-coding downstream 11733 17044018 ~ 17044239 (-)
G33461 NA non-coding downstream 437281 16618302 ~ 16618691 (-)
G33419 NA non-coding downstream 744106 16272067 ~ 16311866 (-)
G33579 NA non-coding upstream 238777 17303458 ~ 17303696 (-)
G33584 NA non-coding upstream 248658 17313339 ~ 17315430 (-)
G33586 NA non-coding upstream 250867 17315548 ~ 17320145 (-)
G33603 NA non-coding upstream 260588 17325269 ~ 17326458 (-)
G33637 NA non-coding upstream 365625 17430306 ~ 17434591 (-)
G33381 ube2v2,LOC107732116 other downstream 1334520 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 2063976 14951842 ~ 14991996 (-)
G33163 NA other downstream 2497682 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 3390742 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 3867680 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 1320186 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 2230131 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 2377714 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 3678849 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 5605966 22670647 ~ 22744182 (-)

Expression


Co-expression Network