AMCG00019371


Basic Information

Item Value
gene id AMCG00019371
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17345622 ~ 17370582 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019371
TGGAAGTGTGGTAATGTAACTCAGCGTCTTCACATGGTGTAAACAGCAGCAATAAAGCTTTGTTTGCAACAGACTTTCACTTTAGGATTCAATTGCAATCTACCCGACAAGGAATACACCATATGTACATACTTGCAGTAGTTTTGGTAttgttttgagaaatgtttaaatgacaaatgtgtaGAAGCCGATCCAAAAGGCAAGCATCGATAGCCACacagaaaactaaattatgTATATGCAGACCTAGTAGTCTCTTGTAAAACGTTTAGTGCATCCTTGCCTTTATATGTGACGTCTTGTCCTATAAGGGGAAAGTAATGGTACAGGCATACTGTACACATAGAGCATGGTAAGGAAAACAGTTTGTCAGGAAACCAgaacaaatatgaatgtttaagTCCAGCGTCTGAGCTCACACCCTGTCCTCGTACTACAACATctgaaaagcaacattttcattcagagAAACGGCAAGATGATCAGTGGGAAATGGAGTTTGGTTGCTGAAATCCTTTTCAGCATTGAAGGACTAGAACATGACACAATTCACTGCCTCTGCTCCAGAGCGTTTGTACAAGATCGAGAAGTATTCCACTATGACCTGACTGGGAGAGATGTGAACATTGACTCTGCAGAAAATGAATATGAAGACCTGGAAGGAAGCAATGAGGAGCAAATTGCATCCTCTATAGATGAAGAACAGCCAGAGGTAGCTGAAGAGCTGGATGAGGAGGCGGTGCTTATGGCCAGCATGGGATTGCCACTCAAGTTTTCAAGCTCTTCAGGACACAAGCCGTACAACgTAATGTGCGAAGGGGtttcaaagaagaaaaggaatagTAGCCATAGACACACAAATTCTAAACGGCATAATAGTTGCATTTCTCTGCAAGCCGAAGAATCATGTCATACTTCAGAGATCACTGAAGAGCCCAACCGTGAAGATATGATGCCGGTAGAGGACATAACCTCAGCTGCCTCTGGGGAACCTACATCTACAGCCGGCTGGGAGGCCTACTGGAGTCAGAATGGAGAACAGCTTCTTTGGCAGAATTGGCTGGAAAAGCATCCAGAAGGGTCAGATGGCCAGTTAGTGCCTCCTTGGGACTGCCCTGACCATAAAAATGAATGGGAACAGCATGCAAGTgaaatgtattactattacttaGAGCAGTTTCAGTACTGGGCCTCCCAGGGATGGACTGTGGATGATTCCTGTGGCAGTTGTACTGAAGAGAAGGTTGTGCTAAATGAAACCCAGCAGGTTGTCATATCTGAGGAAAGTGGAGCCTTAAACTTGGAACTTCCTCTCGGGGTTACTGGTGATACCGAGATTGGAATAAAACCAGAAGAGAGAGTGGAACTGACCATCAAGGCAATGAATATGATTAAGCAGATAAATCTCAATTCGGAGGAAGCAGGGGAAAATGGATCTGCTGTGACACATAATGAGGACACCTGCCGAGGAGCAACGCAACCTGCCAATGAAACCCAGGGAGCCGCATGCCCCAATGGAGATGAGCCAAGTGATGGAGCTAATCGGAAGAGGTTGGCTTCTTCTGGTGGAAACACCACGGAAGCAGCAGGTTCAGAAGTTCTTAAAGGATGTTAAGAAGGATGATGAAGTGACAGGGCCCATGGAGGCTGAGCAGGCAGAAAGCAGTGAGTCTGAAGAAGAGATCCACTCCAAGACAGAAATGTCTCCTGCGCTGGAGGGAAATGGGACAGGACATCAAGAAGGACAAATCAATGCTTCTGAAGCCTGTCTGGCAATCAGCAGCTCTGAGCAACAGGTCCCCGAAAAGTATGAGCACCCATTTCAGACCTCAAAAGGCTCGTTTTCTGAGGGGAGTCTCGAAGAAGAAGAATCATCGAGAGATTTGATAACTTTGGATATTCCAGACTATCTTGTGCCCAGTCCAACTGAAGATAATGATGGTCAAAATTCAAAGGTttcaaaaaagaagaagaagaagaaaagaaagaacaagagGAAAGTCTATAAGGTGCCACCTGAGATAGCTGCTGAGCCTGACCTGGCAAAATACTGGGCTCAGAGGTACCGGCTGTTCTCCAGGTTTGACGAGGGCATCAAGCTGGACCATGAGGGTTGGTTCTCTGTCACTCCTGAGAAGATTGCTGAGCACATTGCTCTCCGAGTTCAGAGCAGCTTCCACGCTGATGTCATTGTTGATGCTTTTTGTGGCGTGGGAGGCAATGCTATCCAGTTTGCTCTGAAAGGAAAAAGAGTGATAGGCATTGACATCGACCCTGTTCGCATCGCCCTGGCTCAGAACAATGCACAGGTGTATGGAGTAGCGGGACAGATTGAGTTCATTCAGGGAGACTTCATGCAGCTGGCTCCAGACCTTAAAGCGGATGTGGTGTTCCTCAGTCCTCCATGGGGAGGCCCAGACTACCTCAGCGCTGATGTTTTTGATCTGAAGACCATGATGTCTCCAGATGGATAtccttttgttttcagatccatTAAGCCAAACTGCCATTAA

Function

GO: NA

KEGG:

id description
K14292 TGS1; trimethylguanosine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019371 True 2513 mRNA 0.46 8 17345622 17370582

Neighbor

gene id symbol gene type direction distance location
AMCG00019373 xkr4,LOC106569249 coding upstream 41756 17298706 ~ 17303866 (+)
AMCG00019374 xkr4,zgc:123035,LOC107679338,LOC107728991,LOC107714844,LOC107674319,LOC107567404 coding upstream 129078 17215654 ~ 17216544 (+)
AMCG00019370 NA coding upstream 131211 17154870 ~ 17214411 (+)
AMCG00019369 NA coding upstream 224675 17119348 ~ 17120947 (+)
AMCG00019367 NA coding upstream 254504 17090069 ~ 17091118 (+)
AMCG00019375 lyn,LOC107728263,LOC108432264,LOC103026730 coding downstream 15268 17385850 ~ 17415697 (+)
AMCG00019382 NA coding downstream 257810 17628392 ~ 17636437 (+)
AMCG00019388 fam110b,LOC107589885,LOC105031585,LOC108247726 coding downstream 336948 17707530 ~ 17708615 (+)
AMCG00019387 NA coding downstream 353841 17724423 ~ 17738652 (+)
AMCG00019385 LOC108412264,LOC105893799,LOC107718110,LOC107693703,LOC107722516,LOC107691428 coding downstream 389491 17760073 ~ 17764666 (+)
G33585 NA non-coding upstream 25587 17315673 ~ 17320035 (+)
G33521 NA non-coding upstream 287402 17057586 ~ 17058220 (+)
G33474 NA non-coding upstream 544695 16798149 ~ 16800927 (+)
G33448 NA non-coding upstream 841546 16496841 ~ 16504076 (+)
G33444 NA non-coding upstream 854569 16488871 ~ 16491053 (+)
G33615 NA non-coding downstream 52042 17422624 ~ 17424898 (+)
G33634 NA non-coding downstream 60371 17430953 ~ 17432628 (+)
G33750 NA non-coding downstream 772914 18143496 ~ 18144704 (+)
G33794 NA non-coding downstream 1014302 18384884 ~ 18389982 (+)
G33795 NA non-coding downstream 1024819 18395401 ~ 18395619 (+)
G33406 NA other upstream 1263679 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 1718667 15554819 ~ 15626955 (+)
G33283 NA other upstream 2175781 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 2858916 14439253 ~ 14486706 (+)
G32539 NA other upstream 6936125 10404639 ~ 10409497 (+)
AMCG00019376 NA other downstream 78738 17449320 ~ 17452659 (+)
AMCG00019402 NA other downstream 1634442 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 1914954 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 2080665 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 3236892 20607474 ~ 20610889 (+)

Expression


Co-expression Network