AMCG00019376


Basic Information

Item Value
gene id AMCG00019376
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17449320 ~ 17452659 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019376
GCGAGCTGGAAGTTGGAGTGTGCTGTGTTGGTAAATGACGTCCTGAGACTGGTTTGAACGTGAGTATTACTGCAGATACGGAAAGGAAACGATCATGGGAAGTAGATAACCCATTGCTGTTTAGCGAAGTGTAGTGCAAATGATTGTTCTCTTCGTGCTGATATGTGTGAGTTGTGTTTGCACGGTTTCCCAGCGTTGCGATTTTGCTGTCAACCAAACCTGAGTTGCCTGAGTGCATGAATGGACTCCGCTACTATATTGTCTTCTTAAACGATCCgggttttaaaatacagtggaCGTCTTCAGATTATCGATGGGATTGATTTGAGCTGATTTTGTCTGAATGCgtttaaaagtattattatgaCGTCGCTAAAGAAGAGGATGCACCGGCACAGTGGGTTACCGGACTGAAGGTCATGCATCAGTTCAGAGGATGTCTTCAAAAGCACGGAAACTTAGAGACCAAGATATTAATCCTTGTTTAGAGGAAACTGATGGTTCTAGAAAATGTTTAGATGCAAATAACTACGATAAAGCCATGTGCTCATCATACTTCCAACGATACAAAAACTGCAGATCATTTTGGCACAAAATAATGATCCAGAGAAGACGAGATGGTATTAAACCTGAGATGCCTGTTGctgaagagagacagacaattTTACAAGCAATAGGAGGGAAACCATACTAAAATTGTAACATCCTATAATTATAGTTTTGGTATTGAATTCTGTGAAGAAATTGCACTCTCAGTGACAGAATTGAGAATCCAAATCAATATGAATGCCTTGTTGTGGCAGTTCGAGGTTTCTTAGGAATATGGAACTCATTGTATATTGGTATTATCTGAATTGTGGCTAGGATGCAAATTGTGCATTATAAGAATGCAATAGATAATGTCTGTAAAGGAATTTAAGCAATGATGTAATATCACTTAAATAAAGAGGttttataattatgaa
>TU42143
GGGAGGGCCTGTCAATACACAACAGGGCACAGCGAGCTGGAAGTTGGAGTGTGCTGTGTTGGTAAATGACGTCCTGAGACTGGTTTGAACGTTCAGAGGATGTCTTCAAAAGCACGGAAACTTAGAGACCAAGATATTAATCCTTGTTTAGAGGAAACTGATGGTTCTAGAAAATGTTTAGATGCAAATAACTACGATAAAGCCATGTGCTCATCATACTTCCAACGATACAAAAACTGCAGATCATTTTGGCACAAAATAATGATCCAGAGAAGACGAGATGGTATTAAACCTGAGATGCCTGTTGctgaagagagacagacaattTTACAAGCAATAGGAGGGAAACCATACTAAAATTGTAACATCCTATAATTATAGTTTTGGTATTGAATTCTGTGAAGAAATTGCACTCTCAGTGACAGAATTGAGAATCCAAATCAATATGAATGCCTTGTTGTGGCAGTTCGAGGTTTCTTAGGAATATGGAACTCATTGTATATTGGTATTATCTGAATTGTGGCTAGGATGCAAATTGTGCATTATAAGAATGCAATAGATAATGTCTGTAAAGGAATTTAAGCAATGATGTAATATCACTTAAATAAAGAGGttttataattatgaatgtgaa

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019376 True 965 mRNA 0.38 4 17449351 17452653
TU42143 False 634 lncRNA 0.37 4 17449320 17452659

Neighbor

gene id symbol gene type direction distance location
AMCG00019375 lyn,LOC107728263,LOC108432264,LOC103026730 coding upstream 33623 17385850 ~ 17415697 (+)
AMCG00019371 NA coding upstream 78738 17345622 ~ 17370582 (+)
AMCG00019373 xkr4,LOC106569249 coding upstream 145454 17298706 ~ 17303866 (+)
AMCG00019374 xkr4,zgc:123035,LOC107679338,LOC107728991,LOC107714844,LOC107674319,LOC107567404 coding upstream 232776 17215654 ~ 17216544 (+)
AMCG00019370 NA coding upstream 234909 17154870 ~ 17214411 (+)
AMCG00019382 NA coding downstream 175733 17628392 ~ 17636437 (+)
AMCG00019388 fam110b,LOC107589885,LOC105031585,LOC108247726 coding downstream 254871 17707530 ~ 17708615 (+)
AMCG00019387 NA coding downstream 271764 17724423 ~ 17738652 (+)
AMCG00019385 LOC108412264,LOC105893799,LOC107718110,LOC107693703,LOC107722516,LOC107691428 coding downstream 307414 17760073 ~ 17764666 (+)
AMCG00019384 NA coding downstream 330675 17783334 ~ 17793587 (+)
G33634 NA non-coding upstream 16692 17430953 ~ 17432628 (+)
G33615 NA non-coding upstream 24422 17422624 ~ 17424898 (+)
G33585 NA non-coding upstream 129285 17315673 ~ 17320035 (+)
G33521 NA non-coding upstream 391100 17057586 ~ 17058220 (+)
G33474 NA non-coding upstream 648393 16798149 ~ 16800927 (+)
G33750 NA non-coding downstream 690837 18143496 ~ 18144704 (+)
G33794 NA non-coding downstream 932225 18384884 ~ 18389982 (+)
G33795 NA non-coding downstream 942742 18395401 ~ 18395619 (+)
G33796 NA non-coding downstream 946357 18399016 ~ 18399743 (+)
G33800 NA non-coding downstream 978705 18431364 ~ 18438265 (+)
G33406 NA other upstream 1367377 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 1822365 15554819 ~ 15626955 (+)
G33283 NA other upstream 2279479 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 2962614 14439253 ~ 14486706 (+)
G32539 NA other upstream 7039823 10404639 ~ 10409497 (+)
AMCG00019402 NA other downstream 1552365 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 1832877 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 1998588 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 3154815 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 5162964 22615623 ~ 22643226 (+)

Expression


Co-expression Network