AMCG00019378 (rs20,rps20)


Basic Information

Item Value
gene id AMCG00019378
gene name rs20,rps20
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17422668 ~ 17424664 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019378
CAGCATTTTGCTTCCTGGCTCACCGCTGTTCGCCTGAATTTTTGTTACACGAATAAGTCGGTCAGGAACATTGAAACATGGCATTTAAGGACACCGGCAAGGCCCCTGTGGATGCTGAGGTTGCCATCCATCGCATCAGGATCACTCTGACCAGCCGCAATGTCAAGTCTCTGGAGAAGGTGTGTGCTGACCTCATCCGTGGTGCCAAGGAGAAGAACCTGAAGGTCAAGGGGCCGGTGCGGATGCCAACCAAGACTCTGCGCATCACAACCAGGAAGACTCCTTGCGGTGAGGGATCCAAGACCTGGGATCGCTTCCAGATGCGCATCCACAAGCGCCTGATCGATCTGCACAGCCCCTCCGAGATCGTCAAGCAGATCACTTCCATCAGCATCGAGCCTGGTGTGGAGGTGGAGGTCACCATCGCAGACGCATAAATGCAACTAATAAAAgtttgaaaagagaaaa

Function

symbol description
rps20 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of small ribosomal subunit. Orthologous to human RPS20 (ribosomal protein S20).

NR:

description
40S ribosomal protein S20

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02969 RP-S20e, RPS20; small subunit ribosomal protein S20e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019378 True 468 mRNA 0.53 4 17422668 17424664

Neighbor

gene id symbol gene type direction distance location
AMCG00019380 NA coding downstream 1184 17414206 ~ 17421484 (-)
AMCG00019372 tmem68,LOC106569251,LOC107577454,LOC104952032 coding downstream 77153 17326591 ~ 17345515 (-)
AMCG00019362 lypla1,lypa1 coding downstream 347483 17068638 ~ 17075185 (-)
AMCG00019364 tcea1 coding downstream 357987 17055972 ~ 17064681 (-)
AMCG00019363 atp6v1h,LOC107686042,LOC107664082 coding downstream 416530 16987641 ~ 17006138 (-)
AMCG00019381 NA coding upstream 13524 17438188 ~ 17440320 (-)
AMCG00019379 sdr16c5,LOC106599159,LOC105008851 coding upstream 35100 17459764 ~ 17477757 (-)
AMCG00019377 NA coding upstream 56659 17481323 ~ 17486099 (-)
AMCG00019383 NA coding upstream 188452 17613116 ~ 17621891 (-)
AMCG00019391 NA coding upstream 382791 17807455 ~ 17840411 (-)
G33603 NA non-coding downstream 96210 17325269 ~ 17326458 (-)
G33586 NA non-coding downstream 102523 17315548 ~ 17320145 (-)
G33584 NA non-coding downstream 107238 17313339 ~ 17315430 (-)
G33579 NA non-coding downstream 118972 17303458 ~ 17303696 (-)
G33533 NA non-coding downstream 368336 17049997 ~ 17054332 (-)
G33637 NA non-coding upstream 5642 17430306 ~ 17434591 (-)
G33665 NA non-coding upstream 199296 17623960 ~ 17624226 (-)
G33686 NA non-coding upstream 318498 17743162 ~ 17773325 (-)
G33758 rab2a non-coding upstream 754425 18179089 ~ 18198157 (-)
G33765 NA non-coding upstream 790944 18215608 ~ 18216742 (-)
G33381 ube2v2,LOC107732116 other downstream 1701216 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 2430672 14951842 ~ 14991996 (-)
G33163 NA other downstream 2864378 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 3757438 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 4234376 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 960203 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 1870148 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 2017731 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 3318866 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 5245983 22670647 ~ 22744182 (-)

Expression


Co-expression Network