AMCG00019379 (sdr16c5,LOC106599159,LOC105008851)


Basic Information

Item Value
gene id AMCG00019379
gene name sdr16c5,LOC106599159,LOC105008851
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17459764 ~ 17477757 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019379
ATTAAATTCAGCTTGAATTGAGCCTGCATTAACGTCAGTCGGAGAGATTGCTAAGTTACTGTCCAGTGCGTCCGCCTCCCCCGCTGAGCACAACAGACCAAAGACACACCCTTTGATGTTTCACTTCTGAAGAGGGCATTTAACAcgaaatataacaaaactgcGAGGACTGCACCTAATGGATTAAGTCGCATTTCACGTTTGCGCTGGCGGTTACGCAAACCATTTTCTGCTGGATATAAGGAGGAGTGACCACAGTAGGCTTGTCCCATTGTAACAGCAGCTCTTTGAAGTGTAGTTGGGTGTCGGTTGTCTCCACAATGAATTTCTTCCTGGAGACACTCCAGGTGTTGGTCCTGTCAATATATTACCTACTTGAATCTTTTGTACTGCTATTCATCCCGGTCAGGAGAAAGAATGTGACTGGAGAGATAGTGCTGATTACAGGGGCTGGCAGTGGCATTGGGAGGCTCATGGCAGTAGAGTTTGCCAAGCTGGGCTCCACGTTGGTACTGTGGGACATCAACCAGGAGGGTAGTAAGGAAACTGTCAGGCTAGTCAAGGAAAATGGAGCCTCCAGAGTCCATTCATACCTCTGTGACTGTAGTAATAAGGCTGAAGTCTACAGAGTTGCAGATCAGgtCAAAAGGGAAGTTGGTGATGTTAGTATTCTTATTAACAATGCTGGAATTGTCACTGGCAAGAAATTCATTGAATCCCCAGATAACCTCTTAGAGAAGACTATGGAAGTCAATAGCATGGCTCACTTCTGGACTTACAAAGCATTCCTGCCAGCAATGATTGCTAGCAACCATGGACATCTTGTCAGTATTGCCAGTTCTGCTGGGCTGATTGGTGTAAATGGACTAGCAGATTATTGTGCCAGTAAATTTGCAGCTATTGGTTTTGCCGAGTCTGTGGCTCTGGAATTGTTGTCTACTGGGAAAGATGGGATAAAAACTACAATTGTTTGTCCATATTTCATAAACACTGGAATGTTTGATGGATGCTGTACAAAGTGGCCCCGTATGCTTCCTATTTTGGAGCCAAATTATGTTGCAAGAAAGATTGTGGATGCAATTCTGAAGAATCAGGTCCTTCTATTGATGCCAAGAAGCTTGTACCTTTTAATGGCTTTGAAGAAcatTATACCTGTAAAGCTTGGGGTGCTCCTGGGCCTGTATCTTGGTGCTTTTAACTTCATGGATCAATTCATGGGTCGTACAAAGAAGGATTAACAATCAAGAATTCATCACAACTTGTGCTTGGACAGTTTTATTCACATATGACTGCAACACTCTATGAGAGTGGATCGGATCCCAGGTTTTAGAATTTAAATTACTCATAAaatagatttgtattaattctgTACATTAGAATAGTTTCATTGCCTTTTATATTGAGAACAGaacttgactttttttttaacctacgTATGTAACTTCATGTACACAACTGTGTAGTAGTTATATAGTTAAGATGTTGATTAAGGAGAACACAGTCTATATGTCCCTCCTTACCTTCACCTGACCAAGAATTTCTATGTATGATTAAGTGTTAAATACATCACAGTTCCATGTTACCTTACATTTTCCAATACAaggaatatataaaaaaataacattttgaaggCAAGTAAAGCAAATTAACTTATGAAATAGCACTTCCCTATAGAGAAGTTTGTTATAGGCTCATGCCTTAGCATTTTAAATTTtgatttgtgaaatatatatttctagacTTATTTTAATAGCTATTTAATTCATGTCTGTGAAGCCACCCCATAGGGATTTGACAAATGTAATTTACCAGTGTAGGTAATATAACTAAAGTAATAATTTTACATACATGAGCTATGGGCAGGTTTATGtgttatgaattaataataataataataacctcaGCAACAGAAGGTGAAGATAATTTACTTTTGGTTTGGTATTTGTGTATGCTGTGGCTCCTCAGTTAGTGgagtaaataatattttttttaatgtcattttcaaaCTAATTTACTAAATTCATCCAATGTGTAGGATGTCTGACAGATTATATCTACATCTGACCACttgatattatttaattgtaatgtttctttatttcaatcTTTATTTACTGCTTGACAGAAGAATTTTGGTTATGTAAGACTTATTTGCTCATGAATTGGTGCATTATTTCATGTTTCAAGTTAAGCTGAAGTCTgcaacatttcaattttatgtAGCCTAATCTACTTGGTATTGTATCAGATGTATAGAATGTGTACATTCTTGTAAGTGAAGTGAGCATCATAAAATAACTATGCCCACCAAAATTCAGAATTTCAAAAGTTGTATTACTTACATCGTACTTATTTCACTGTATTGCATTGTAGTGTGATCTAAACTTGACAGTTGCCTgttgtttattgtaaattacTGTTGTTTACTGTAAAGCATGTGTGACAGGTGTGAATGGTACTGCATCACTGTCCTTTACAATGTACAACCTCAATGAATATACATTCGACAATtgtaatattatgaataattttcCAGTCTGGATTATAACCACTAAGAACTATTACATCTTGAACTATATTGCTATATGCTATATTGTgtgaaacatcttggggaggcagTGGATCGATACATCCAAGAGGACTACTGTTGACATTGTTTTAGCACTTTACAACAGCATTTTAGAGATTAGGAGTACATTTTACTAATTGCATTAAACTACATTTTGCCCacttctgtagtttttttttctattattttatacttGTCTCTTGATTGTCTCTCATTAAAGCTGTTGTATCTTTGCGTTCTGTTGCACAATCCTGTATGATCTTGCCATATCCACgcaattacaatgtttttatataatctaAGATGACCTTCAACCAAAACCATTtcaaaaatcaattaaaaaatcaattgttatttcaaaatggtttaaataaaatgtatcactgAGCACTTAGAGCACCTAATAAGTACCCC

Function

symbol description
sdr16c5 Enables NAD-retinol dehydrogenase activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and transcription corepressor activity. Involved in several processes, including keratinocyte proliferation; regulation of histone modification; and retinoid metabolic process. Located in endoplasmic reticulum membrane and nucleus. Part of transcription repressor complex. Colocalizes with chromatin; endoplasmic reticulum; and plasma membrane.

NR:

description
PREDICTED: epidermal retinol dehydrogenase 2-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K15734 SDR16C5; all-trans-retinol dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019379 True 2983 mRNA 0.36 8 17459764 17477757

Neighbor

gene id symbol gene type direction distance location
AMCG00019381 NA coding downstream 19444 17438188 ~ 17440320 (-)
AMCG00019378 rs20,rps20 coding downstream 35100 17422668 ~ 17424664 (-)
AMCG00019380 NA coding downstream 38280 17414206 ~ 17421484 (-)
AMCG00019372 tmem68,LOC106569251,LOC107577454,LOC104952032 coding downstream 114249 17326591 ~ 17345515 (-)
AMCG00019362 lypla1,lypa1 coding downstream 384579 17068638 ~ 17075185 (-)
AMCG00019377 NA coding upstream 3566 17481323 ~ 17486099 (-)
AMCG00019383 NA coding upstream 135359 17613116 ~ 17621891 (-)
AMCG00019391 NA coding upstream 329698 17807455 ~ 17840411 (-)
AMCG00019390 NA coding upstream 419434 17897191 ~ 17911523 (-)
AMCG00019392 ca8,LOC106599582,LOC107693711,LOC107585586 coding upstream 671730 18149487 ~ 18165134 (-)
G33637 NA non-coding downstream 25173 17430306 ~ 17434591 (-)
G33603 NA non-coding downstream 133306 17325269 ~ 17326458 (-)
G33586 NA non-coding downstream 139619 17315548 ~ 17320145 (-)
G33584 NA non-coding downstream 144334 17313339 ~ 17315430 (-)
G33579 NA non-coding downstream 156068 17303458 ~ 17303696 (-)
G33665 NA non-coding upstream 146203 17623960 ~ 17624226 (-)
G33686 NA non-coding upstream 265405 17743162 ~ 17773325 (-)
G33758 rab2a non-coding upstream 701332 18179089 ~ 18198157 (-)
G33765 NA non-coding upstream 737851 18215608 ~ 18216742 (-)
G33830 NA non-coding upstream 1128384 18606141 ~ 18615254 (-)
G33381 ube2v2,LOC107732116 other downstream 1738312 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 2467768 14951842 ~ 14991996 (-)
G33163 NA other downstream 2901474 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 3794534 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 4271472 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 907110 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 1817055 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 1964638 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 3265773 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 5192890 22670647 ~ 22744182 (-)

Expression


Co-expression Network