AMCG00019381


Basic Information

Item Value
gene id AMCG00019381
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17438188 ~ 17440320 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019381
ATGGCCACGGTAATACCTGGGGATTTAGCAGATGTTAAGGATACCCAGAAGGTCCCTTCTGCCACAGGGAAACGTAAGAGAGGTGAAAGCAAACCCAGGAAAAACTTTCCGTGCCAGCTGTGTGATAAGGCCTTTAACAGTGTTGAGAAATTGAAGGTGCATTCTTACTCTCACACAGGAGAAAGACCATACCAGTGCTCTCACCAAGACTGCACCAAGGCCTTTGTTTCTAAGTACAAGCTGCTAAGGCATATGGCTACTCATTCTCCTGAGAAAACCCACAAGTGTAATTATTGTGAGAAAATGTTTCACCGCAAGGATCACCTAAAGAATCACCTTCATACTCATGATCCAAACAAAGAGGCATTTAAGTGTGAAGAATGTGGCaagaattacaatacaaaacttGGCTTCAAGCGTCATTTAGCCTTACATGCTGCAAACAATGGCGACCTCACCTGCAAGGTCTGTTTGCAAACGTTTGGAAGCACAGGGGTGTTACTGGAGCATTTGAAGACCCACGCCAGTAAATCTTCAGGTGGGACCAAAGAAAAGAAGCACCAGTGTGAACACTGTGACCGACGCTTTTATACCCGTAAGGACGTTCGTAGGCACATGGTGGTACACACTGGGAGGAAGGACTTTCTCTGTCAGTACTGTGCGCAGAGATTTGGCCGGAAGGACCACCTAACCCGCCACATGAAGAAGAGCCACACACAAGAACTGCTTAAGGTAAAAACGGAACCAATGGACCTCTTAGATCCCTTCTCCTGTAACCTGAGTGTGCCGATCAAAGACGAACTCCATTCAATGATGTCAATATCTTCCAGTGAACTTGCCTCCAAGCCATTTGCCAACACTTTGCAGCTAAACATCTACAACACTCAGATCCAGTCCATGCAGAGCAGTGGACCTCAACACCAAATGGTTTCCACAACCTTACCCTTAGGAATGACATGCCCTCTTGACATGGAATCTGCTGTCCACCCTTCCCatcagttttctttaaaataccaGCTCGGTTCTACCTCATATGCTCATTCTATGCCGGAAAAAGAACAGCCATTAAAGGGAGAAATTGAGAGTTATTTAATGGAATTACAAGGCAATATGCCATCTTCATCACAGGATACTCAAGGCTCGGCTTCAAAATTAGACTTGGAGCCCCAGGTAGGGGCACTGGATGAACCACCTAGTGATGTTTCCCTAACAAAAATGTCTGGCTCTGCCCCTGTCAGTGAATCTCTTAATTCCTCTTCCTTAGACTTCTCTCAACTCTTTAACTTCCTGCCTTTAAATGGGCCTCCATATAACCAGTCTATTTCATTAGGAGGCCTGGGAATCAATTACACCCAGGAGGAAGCTCTGGCTCTGTCCCAGTTGCCCTCACAAGCCCAGGAGTCTCAAGATCCTGGGAGTGGTGTAGGAATCGGCCCTCTCCATGGGCTGTCTTCATCCTTTACATCCAATTTAAGCACAACTACCACCCTGCCTCGATTTCATCAAGCTTTTCAGTGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K19484 PLAG1; zinc finger protein PLAG1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019381 True 1518 mRNA 0.46 2 17438188 17440320

Neighbor

gene id symbol gene type direction distance location
AMCG00019378 rs20,rps20 coding downstream 13524 17422668 ~ 17424664 (-)
AMCG00019380 NA coding downstream 16704 17414206 ~ 17421484 (-)
AMCG00019372 tmem68,LOC106569251,LOC107577454,LOC104952032 coding downstream 92673 17326591 ~ 17345515 (-)
AMCG00019362 lypla1,lypa1 coding downstream 363003 17068638 ~ 17075185 (-)
AMCG00019364 tcea1 coding downstream 373507 17055972 ~ 17064681 (-)
AMCG00019379 sdr16c5,LOC106599159,LOC105008851 coding upstream 19444 17459764 ~ 17477757 (-)
AMCG00019377 NA coding upstream 41003 17481323 ~ 17486099 (-)
AMCG00019383 NA coding upstream 172796 17613116 ~ 17621891 (-)
AMCG00019391 NA coding upstream 367135 17807455 ~ 17840411 (-)
AMCG00019390 NA coding upstream 456871 17897191 ~ 17911523 (-)
G33637 NA non-coding downstream 3597 17430306 ~ 17434591 (-)
G33603 NA non-coding downstream 111730 17325269 ~ 17326458 (-)
G33586 NA non-coding downstream 118043 17315548 ~ 17320145 (-)
G33584 NA non-coding downstream 122758 17313339 ~ 17315430 (-)
G33579 NA non-coding downstream 134492 17303458 ~ 17303696 (-)
G33665 NA non-coding upstream 183640 17623960 ~ 17624226 (-)
G33686 NA non-coding upstream 302842 17743162 ~ 17773325 (-)
G33758 rab2a non-coding upstream 738769 18179089 ~ 18198157 (-)
G33765 NA non-coding upstream 775288 18215608 ~ 18216742 (-)
G33830 NA non-coding upstream 1165821 18606141 ~ 18615254 (-)
G33381 ube2v2,LOC107732116 other downstream 1716736 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 2446192 14951842 ~ 14991996 (-)
G33163 NA other downstream 2879898 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 3772958 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 4249896 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 944547 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 1854492 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 2002075 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 3303210 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 5230327 22670647 ~ 22744182 (-)

Expression


Co-expression Network