AMCG00019385 (LOC108412264,LOC105893799,LOC107718110,LOC107693703,LOC107722516,LOC107691428)


Basic Information

Item Value
gene id AMCG00019385
gene name LOC108412264,LOC105893799,LOC107718110,LOC107693703,LOC107722516,LOC107691428
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17760073 ~ 17764666 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019385
GCCTCTTCAGGATATCTTGTACAACCTAGTCTCCTGCACTAAGCAGACACGATGATTCTTAGCATTGCATTGATCTGGGGATTTGTAGTTGGGCTTTGTTGCTGCTTGTGGCTTATTCTGGGGATCCGCAGAAGGCGTCCAGGAGAGCCTCCAGTAGAGAATGGTCTTATCCCATATCTTGGATGTGCACTTCAGTTTGGTGCTAATCCTCTTGACTTTCTCCGAAGTCGGCAAATGAAGTACGGGCACATCTTCACATGCAAGATTGCAGGCCAATATGTTCATTTCCTCACAGACCCTTTCTCATATCATGCTGTCATCCGCCAGGGAAGGCATCTGGACTGGAAAAAATTTCACTTTTCTGCCTCTGCCAAGGCATTTGGACATGAAAGCATGGATCCCAGTGATGGCTACACCACAGAAAACCTGCACCAGACATTTATCAAAACAATGCAGGGGGACGCCCTGCCATCTCTCATAGAAAACATGATGGAGAACCTTCAGTGTGTTATGCTGCAgtcaaacacactgaaaatcaaCTCAAAAGACTGGGTCACAGAAGGTATCTTTGCCTTCTGCTACAAAGTGATGTTCGAGTCTGGCTACTTAACACTCTTTGGCAAAGAGCTCAGTGCTTATGAAGACAAAACCCTTGCCAGGCAGGAAGCTCAAAAGGCACTGGTTCTGAATGCTCTGGAAAATTTCAAAGAGTTTGACAAGATCTTCCCTGCTCTTGTCGCTGGACTCCCCATTCATGTTTTCAAGAGTGCTCATAGTGCTCGAGAAAACCTCGCCAAGACCCTTCTCCATGAAAACCTTAGCAAAAGGCAAAatatttctgatttaatttcccTCCGGATGTTTCTGAATGACACCTTATCCACCTTTAATGATATGAGTAAGGCACGAACCCATGTAGCTTTGCTATGGGCATCACAAGCCAACACATTACCAGCCACGTTCTGGACTTTGTTCTATTTGATCAGGTGTCCTGAGGCAATGAAAGCCGCCAGTGAGGAAGTGAAGAGGACACTGGAGAAATCTGGTCAGAAAGCTAGTTTAGACGGAAGCCATATTTTCTTGAAGAGAGAGCAGTTGGATGACATGCCCATTCTAGatAGCATCATCAAGGAATCCATGAGGCTATCTAGTGCATCCCTAAATATCCGAGTTGCCAAGGAAAATTTCTTACTACACTTAGATAACAATGAATCCTACGACATTCGTAAAGATGATGTTATAGCACTATATCCACAACTACTCCACTTTGATCCAGAAATTTACGAAGACCCACTGACATTCAAATATGACAGATACCTGGATGACAATGGACAAGAGAAGACATCCTTTTTCAGAAATGGTCGCAAACTAAGATATTACTACATGCCTTTTGGCTCCGGAGTGACAAAATGCCCTGGGAGGTTTTTTGCCGTACATGAAATCAAACAGTTCTTGTCTCTGCTGCTCTCCTACTTTGACATGGAACTTGCAGACCCACATGTGAAAATCCCTCAGCTGGATCAATCTCGAGCTGGACTGGGAATTTTGCAACCGACCTATGATGTAAATTTTAGGTACAGAATGAAGAacttataaaaaatatacatgtatataaactaTTTTGTTCTATAGCTGGattgtaaatactgtatattaaagtTATAACTGCATAATAACCATGTACATAAACTATGTGtgcttttatatttgtttattattatttgtttttcaattgtgATTATTAAAGACTGTATATTGATTACTCCTTATGAAATATTCTTAGCAGTTCTACAGTTAAGCTTTTATGGcctataataaatgtataaaacttgTATAAACtagcatttaaacaatgtaaaagtgTATCTCTGGGAAATATAGGAAATTGTATGAGTTCCCCATTGCAGAGCTTTTTTAGCATAAGCATgaaaactgtttaatttgaaataacaaCCTGtttagataaaataaaacaccaagaaaaaactaaagcatTATAAGTAATCTAAATGCAAAtgtagagaaagagaaagacacatACTTTACTGTGCAAACAATATTGGTTTTTGAACACCACACTACATACTATagatacttttctttattttataattaacaataataaaaagctatgtttttgttttttcacccacgattcaaatgcttttacaaatgcttttcaatattttcattacattaaaattgcttttgtactattttattaaaagcaaaactgaTTAACAGCTGTAgcacatttttatgtaatgcttattacattttccatatttgattatttactATACATATCTTAAACTATTATGAAGAGAC

Function

NR:

description
PREDICTED: cholesterol 7-alpha-monooxygenase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00489 CYP7A1; cholesterol 7alpha-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019385 True 2328 mRNA 0.38 6 17760073 17764666

Neighbor

gene id symbol gene type direction distance location
AMCG00019387 NA coding upstream 21421 17724423 ~ 17738652 (+)
AMCG00019388 fam110b,LOC107589885,LOC105031585,LOC108247726 coding upstream 51458 17707530 ~ 17708615 (+)
AMCG00019382 NA coding upstream 123636 17628392 ~ 17636437 (+)
AMCG00019375 lyn,LOC107728263,LOC108432264,LOC103026730 coding upstream 344376 17385850 ~ 17415697 (+)
AMCG00019371 NA coding upstream 389491 17345622 ~ 17370582 (+)
AMCG00019384 NA coding downstream 18668 17783334 ~ 17793587 (+)
AMCG00019386 sdcbp coding downstream 34939 17799605 ~ 17804445 (+)
AMCG00019389 rab2a coding downstream 414583 18179249 ~ 18207126 (+)
AMCG00019394 NA coding downstream 466549 18231215 ~ 18239613 (+)
AMCG00019393 chd7,LOC107585562,LOC107688517,LOC107718105,LOC107589837,LOC106568873 coding downstream 493143 18257809 ~ 18296221 (+)
G33634 NA non-coding upstream 327445 17430953 ~ 17432628 (+)
G33615 NA non-coding upstream 335175 17422624 ~ 17424898 (+)
G33585 NA non-coding upstream 440038 17315673 ~ 17320035 (+)
G33521 NA non-coding upstream 701853 17057586 ~ 17058220 (+)
G33474 NA non-coding upstream 959146 16798149 ~ 16800927 (+)
G33750 NA non-coding downstream 378830 18143496 ~ 18144704 (+)
G33794 NA non-coding downstream 620218 18384884 ~ 18389982 (+)
G33795 NA non-coding downstream 630735 18395401 ~ 18395619 (+)
G33796 NA non-coding downstream 634350 18399016 ~ 18399743 (+)
G33800 NA non-coding downstream 666698 18431364 ~ 18438265 (+)
AMCG00019376 NA other upstream 307414 17449320 ~ 17452659 (+)
G33406 NA other upstream 1678130 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 2133118 15554819 ~ 15626955 (+)
G33283 NA other upstream 2590232 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 3273367 14439253 ~ 14486706 (+)
AMCG00019402 NA other downstream 1240358 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 1520870 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 1686581 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 2842808 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 4850957 22615623 ~ 22643226 (+)

Expression


Co-expression Network