AMCG00019388 (fam110b,LOC107589885,LOC105031585,LOC108247726)


Basic Information

Item Value
gene id AMCG00019388
gene name fam110b,LOC107589885,LOC105031585,LOC108247726
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17707530 ~ 17708615 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019388
ATGGTCAAGCCTGTAGGCCAAGCAACCACCTTTACCTCCGCCGTACCTCTCCGCATACTAAACAAAGGGCCGGATTATTTTCGCAGGCAGGCTGAACCCAACCCGAAAAGACTGAGTGCAGTTGAGAGACTGGAAGCAGACAAGGCCAAATATGTTAAAAGTCAAGAGGTGATCAACGCAAAGCAGGAACCAGTGAAGCCGGCAGTGTTGGCTAAACCCCCGGTTTGCCCCATCACAAAAAGAGCAGGGAGCAGTCCGGCGTTGAAGGCTTCGAACAATAATTCCAAGTCTGAGAGTAGTGTGAAAAGAGAGAATTTGAACCTGGAAATCCTCAAAAATATAATCAACAGTTCGGAGGGCTCTTCCTCGGGAACAGTGCATAAACACAGTTCCAGAAGCTGGGCTCCCCACAGGTCAGAATCAACTGAGCTCAATCGACGGTCCTTTGCAGAATCGCTCAAGGTATTCCCAACACAAGGCCATTCAAGCCCCCAAGGAAGCAACCTAAATATTAGTAAACGGCTGTTTGAAGAGCAGTCCAGCGACTCATCACTACATGTCTCCCATAGTTCTTCAGACATTAGAAGAGTATGCAATGGTAAGCCATTTAAAGCTACACCTAGCAGTAGTTCTGCACCACCTCTGCCTCCTAAGCCCAACATCACAGCTTGCAATACGCTTAAATCGCCCGAGAATGACACCGTAGAGCCGGACAGTGGTGTAAGCAGGAGACCTTCACTGCACAGATCTAAGTCCGACCTCAGTGACAGATATGCTCGTGCGAGTGCAGACGTTGaacgtttttttaattactgtggACTGGATCCTGAAGAACTTGAAAACTTCGGTGTGGAGAATTTCACGCGGGCAAACTCAGATATAATCTCCCTAAACTTTCGCAGTGCAAGCATGATTAGCTCAGACTGCGATCAGTCACGGCATAGCAATGATGACCTAACAGATGATGAGGACGCCAATGAACGAGTGCCGTATGGCATCTCTGCAGTCGAAAGGAATGCAAGAGTCATCAAATGGCTCTATAGCATCAAGCAAGCCAGAGAATCTCAGAAAGTGTCTCATGTTTGA

Function

symbol description
fam110b Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in brain and epiphysis. Orthologous to human FAM110B (family with sequence similarity 110 member B).

NR:

description
PREDICTED: protein FAM110B-like, partial

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019388 True 1086 mRNA 0.48 1 17707530 17708615

Neighbor

gene id symbol gene type direction distance location
AMCG00019382 NA coding upstream 71093 17628392 ~ 17636437 (+)
AMCG00019375 lyn,LOC107728263,LOC108432264,LOC103026730 coding upstream 291833 17385850 ~ 17415697 (+)
AMCG00019371 NA coding upstream 336948 17345622 ~ 17370582 (+)
AMCG00019373 xkr4,LOC106569249 coding upstream 403664 17298706 ~ 17303866 (+)
AMCG00019374 xkr4,zgc:123035,LOC107679338,LOC107728991,LOC107714844,LOC107674319,LOC107567404 coding upstream 490986 17215654 ~ 17216544 (+)
AMCG00019387 NA coding downstream 15808 17724423 ~ 17738652 (+)
AMCG00019385 LOC108412264,LOC105893799,LOC107718110,LOC107693703,LOC107722516,LOC107691428 coding downstream 51458 17760073 ~ 17764666 (+)
AMCG00019384 NA coding downstream 74719 17783334 ~ 17793587 (+)
AMCG00019386 sdcbp coding downstream 90990 17799605 ~ 17804445 (+)
AMCG00019389 rab2a coding downstream 470634 18179249 ~ 18207126 (+)
G33634 NA non-coding upstream 274902 17430953 ~ 17432628 (+)
G33615 NA non-coding upstream 282632 17422624 ~ 17424898 (+)
G33585 NA non-coding upstream 387495 17315673 ~ 17320035 (+)
G33521 NA non-coding upstream 649310 17057586 ~ 17058220 (+)
G33474 NA non-coding upstream 906603 16798149 ~ 16800927 (+)
G33750 NA non-coding downstream 434881 18143496 ~ 18144704 (+)
G33794 NA non-coding downstream 676269 18384884 ~ 18389982 (+)
G33795 NA non-coding downstream 686786 18395401 ~ 18395619 (+)
G33796 NA non-coding downstream 690401 18399016 ~ 18399743 (+)
G33800 NA non-coding downstream 722749 18431364 ~ 18438265 (+)
AMCG00019376 NA other upstream 254871 17449320 ~ 17452659 (+)
G33406 NA other upstream 1625587 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 2080575 15554819 ~ 15626955 (+)
G33283 NA other upstream 2537689 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 3220824 14439253 ~ 14486706 (+)
AMCG00019402 NA other downstream 1296409 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 1576921 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 1742632 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 2898859 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 4907008 22615623 ~ 22643226 (+)

Expression


Co-expression Network