AMCG00019391


Basic Information

Item Value
gene id AMCG00019391
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17807455 ~ 17840411 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019391
ATGGCTTTTATTAAGAAGAAAGAACGAGCCAAGGAGAGGAAAGTTAGAGGATCTCTCAAGATTTGTTCTAAATCTCTCATTTTTGAACCAGAACCGGTATCTGAACCCATTTTAAAGATAGCACTGAGAGACTGTAATAGAATTGAAGAAATTGAAGAAAGACGACACAATAATCCTTTTAATGAAAAAAAGTGTGCTGGACTCTTGGTTGTATGCCGACAGgtTTACCTCATCAAAGAAAGCAACATTGTAGCTCCTTATAGAATTGAAAGGGGAGGACATGACTTCTTGTTTCAACTTGAAATCTCAATTAAAACAGAAGATGTTGTCCAGACTTTGCTTCAGCTTCACAGAGCATCTTGTCTTGACAAGCTGGGTGATCAGACTGCTATGATTGCTGCCAACCTGCAGTCACGTTTGGCTAGGACATCTTTTGATAAGAACAGTTTTCACAGCGTTTCAGAGAAGCCTCACATGGAATGTGAAGCTGAAATGGTGACTCCACTGGTGACCAACCCAGGACATGTGTGCATTACTGACCAAAACCTCTACTTCCAGCCACTCAATGGATATCCAggcCTTGAAGTGTTTTGCACTGAGAATGACCTCTGTTCTGACATGTATTTGAAGTTTTACAAACCTGAAGACAGAGATGAACTCTATTACTATATTGCTACTTTCCTAGAAAACCACATGGTGGAACACACAGCTGAGAGCTACATGCTGCAGTGGCAGAGAGGGCATATCAGCAATTATCAGTACCTTTTACACCTCAACAATCTGGCAGACCGGAGCTGCAATGACCTCTCCCAGTACCCTGTGTTCCCCTGGGTAATAGATGATAACAGCAGTGCTGAGCTGGaCTTGATGAATCCAAGCACTTTTCGAGATTTGAGCAAGCCGGTTGGCGCACTGAATAAGGAAAGAATGGAACGACTTTTGGATCGCTACAGAGACATGCCAGATCCAAAGTTTATATATGGGAGCCATTATTCCTCCCCAGGTTATGTGCTCTTCTACCTTGTCAGAGTGGCTCCAGAGTACATGCTCTGTCTACAGAATGGACGATATGACCATGCAGACAGAATGTTTAACAGCATATCTGAAACATGGAAAAACTGCTTAGAAGGTGCAACTGATTTCAAGGAGttgATTCCTGAATTTTATGGGAGTGATTCCAGTTTCTTGATGAACACACTGAAACTCCAGCTGGGGACGAGACAAGGAGGAAAAACTGTGGGAGATGTGCTCCTTCCACAGTGGGCAAAAGATGCAGACGATTTCCTGGAGAAGTGTCAAAAAGCACTGGAGAGTCAGTACGTGTCAGAGCACCTTCATGAGTGGATTGATCTCATCTTCGGATACAAGCAGAGAGGAAGTGAAGCCATTGCAGCACACAATGtgtttcaTCCTTTGACATATGAAGGAGGCATGGACTGTGACAGtATTGAAGATCCTGAACAGAAGATAGCAATGCTGACCCAGATTTTGGAATTTGGTCAGACACCAAAGCAGCTGTTTACCACTCCGCACCCACAAAGGATAACACCAAAGTTTCAAAGCATGTCCAGGACTCCGAGCCAAAGCGCCTCTCTGAATGAGCTGTCCCCAGTATCAACTAGTGAAGATTCCTCCTTTGAAGATTTGACAGAAGAGAGCAAAAAGCTTGCTTGGAGCAATATGTGCAAGCTGAAGATGATGTCCAGCCATAAAATCCATAAAGAGGCTGTTACAGGAATAGCAGTGACTCACAATGGGTCATCGGTTTTCACAACATCACaagATTCTACCCTCAAGATGTTTTCCAAAGAATCAAGTGCATTGCAAAGAAGCATGTCCTTCTCCAATATGGCTTTATCATCTTGTTTGGTGCTCCCAGAAGATACAATGGTTGTGTGTTCATCATGGGATAACAATGTatatttttattcaattgcTTTTGGAAGACGACAAGACACAATCATGGGGCACGATGATGCCATAAGCAAAATATGCTGGCGGGACAATCAGCTGTACACAGCTTCCTGGGACTCCACCGTCAAGgTTTGGAGATGTGTTCCTGCAGATATTGCCAGTAATAAACGGAGTCAGTTTGAGCTTCTGGCTGAGCTAGAACATGATGCAGGGGTAAATACAATCAATCTGAACCCGGCTGGTACAATGCTGGTGTCTGGCTCAAAAGAAGGAGTTGTTAGTATATGGGATGTCACCACCTTTGCACTGTTACATCAAGTGCTTTGCCACTCAGGGAGAATCAATGACATTGCTTTCAGCCCTGACAGCAGACATACCTTCAGTGTTGGAGAAGACGGATCATTGAAAGTCGTTGATGTGCAGACAGGCATGCTGATATCATCTGTGGCTTCAGAGGAGCCGCAGAGATGCTTCTGCTGGGATGGGAATACTGTTCTTTCTGGCAGCCAATCAGGGGAGCTGTTGATATGGGACCTTATGACTGGGAAAGTTACAAAGAAAATTCCTGGGCATTCAGGTGCTGTTACAGCTATGTGGATGAATGAACAGTGTAGTAGTATTATAACTGGAGGGGAAGACAAACAGATTGTTTTCTGGAAACCACAATATTAATGTGCTATGAAGTGCCTATGCTTCTGAAACACCCAGCTCTACAGCAGTGTCACAAAGAAAAGTGCAGTGTTTCCCAAAAATACAGAATATCCTATTTTCTTTGTCAGATCTACAAACTGACATTGCATTACATGGAATTACATACCAAAACTCAATTTTGAACAACAGTAGGATTTGTTTTcgtttttcctatttttgttaaataataaaagggtTTAATGCCCATTGCAGACACAATCCAAGATTTAGACAAGGAATAACTGATTTGACAACAATAATCCATAAGTATTTTGcactaaaatgttaatgtaaatgttgGCATATGGATGCGATTTCTGTAGAAACTagttttattgtcttttgtGTTGTCAGGATATTTTTGGCAGTTTTAACTTGAAATGTGCCTTATTGCCTATCACAGAAAGCTCTAGGGCTGgattagttttaaaaatgcttgatcatgaagaaaaacattttttgtattattattttttctatctaAGCTAATTTTTTATGAAGATGCAGTGTGAGTCTGTCTTTGTTGGGAAATATTACGTTTGCTGAaacttttcttaaaatgtaataggGAATAACATAACATCAGTCATGCTCTCACTATCGTTAAATAAAACCTATATTGATGTACAATTAGATGCATGGCAACCCACATATACACTTAGCAATCATGAGTACTGTACTAAGTAGGTGTTGATAGTTCATTAGCAGTGATTGAGTTCAACAACATCATGAGTCAAAGTCAAACTTGCCATACTATATTATGAATTGTTAATATGAAGATTGCTTTCCCTTTACCAGTTCCTAGCATCTAGAATGCATTATgttcaaagaagaaaaatgctttcaaaaataattcaaCATTTAACACTAGTGTATAATAGGAGATTTAGTGATTATTCAGGTTCCTATCAAAGCATGAAGGCCATTGCGAACATTCCAAACAATAAAAATCTATTCaaaattcaatttgtattctttatcttttaaaaactgTCATAGTAACTGTAAATTAGTTTAAGATTTCATGAGCATGTCACAGTATTCTATTGACAATCATAACATTTAGGAAATGTGAAGATACAATTCACTCCTTTGGCACATGTGTAGGTATGTTAAGAGCATGAATCTGTACATTCTATCATTGATCTTCATCCTGCATGTGTATTATATAACCTCTAATTTCTTAATATgagaatatattgaaattaGACAAGTGTGTTGTGTTATataagtaaacattaaaaagcattgaaaagtatttcaaaattgCAATATTATCGTTTAAGTCTATGCAGATGTTTTAACCACATTGTGAATATGCCCTGCAGGTTTAGTAAAGATGCAGTAAAAACAATATAGGCATGTTAAATACTGGATTTATTCTGATGACCAACTAAGTCTTTATTCTGGAAAAGTATTTGAgtgttatgtttatttgtgatgTATGCTTATGCCTACATGTGTTATGCCAAGTTTGTGAGAATTATGTTTCAAATCagatgctgttttgttgttttaatacacatacaaatctAGGGGGACTATTCCAAGTTTtcaattttgtcattttatcaACTTAATAAAGTATAACACAtaaacaacata

Function

GO: NA

KEGG:

id description
K18953 NSMAF, FAN; factor associated with neutral sphingomyelinase activation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019391 True 4209 mRNA 0.39 29 17807455 17840411

Neighbor

gene id symbol gene type direction distance location
AMCG00019383 NA coding downstream 185564 17613116 ~ 17621891 (-)
AMCG00019377 NA coding downstream 321356 17481323 ~ 17486099 (-)
AMCG00019379 sdr16c5,LOC106599159,LOC105008851 coding downstream 329698 17459764 ~ 17477757 (-)
AMCG00019381 NA coding downstream 367135 17438188 ~ 17440320 (-)
AMCG00019378 rs20,rps20 coding downstream 382791 17422668 ~ 17424664 (-)
AMCG00019390 NA coding upstream 56780 17897191 ~ 17911523 (-)
AMCG00019392 ca8,LOC106599582,LOC107693711,LOC107585586 coding upstream 309076 18149487 ~ 18165134 (-)
AMCG00019399 NA coding upstream 742439 18582850 ~ 18590919 (-)
AMCG00019398 LOC107674130,LOC107714858 coding upstream 754572 18594983 ~ 18605836 (-)
AMCG00019404 NA coding upstream 980752 18821163 ~ 18833805 (-)
G33686 NA non-coding downstream 34130 17743162 ~ 17773325 (-)
G33665 NA non-coding downstream 183229 17623960 ~ 17624226 (-)
G33637 NA non-coding downstream 372864 17430306 ~ 17434591 (-)
G33603 NA non-coding downstream 480997 17325269 ~ 17326458 (-)
G33586 NA non-coding downstream 487310 17315548 ~ 17320145 (-)
G33758 rab2a non-coding upstream 338678 18179089 ~ 18198157 (-)
G33765 NA non-coding upstream 375197 18215608 ~ 18216742 (-)
G33830 NA non-coding upstream 765730 18606141 ~ 18615254 (-)
G34006 NA non-coding upstream 1626665 19467076 ~ 19480968 (-)
G34148 NA non-coding upstream 2637846 20478257 ~ 20549700 (-)
G33381 ube2v2,LOC107732116 other downstream 2086003 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 2815459 14951842 ~ 14991996 (-)
G33163 NA other downstream 3249165 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 4142225 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 4619163 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 544456 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 1454401 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 1601984 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 2903119 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 4830236 22670647 ~ 22744182 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000213_00262674_00278850 NSMAF coding CI01000213 null 262674 ~ 278850 (+)