AMCG00019392 (ca8,LOC106599582,LOC107693711,LOC107585586)


Basic Information

Item Value
gene id AMCG00019392
gene name ca8,LOC106599582,LOC107693711,LOC107585586
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18149487 ~ 18165134 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019392
ATGGCTGACAATATGATTGAAGAATCTGATTACTATCCTGATAAGGATGATTTGGAGTGGGGATATGAAGAAGGTGTAGAATGGGGTCTGTTGTTCCCTGAAGCAAATGGAGAATATCAGTCTCCCATAAACCTCAACTCCAGGGAGGCCAGGTATGACCCCAAACTCCTGGAAACCCGCCTGAACTCAAACTACGTGGTTTGCCGTGACTGCGAAGTCATTAATGACGGGCACACTGTACGGATACTGCTAAGGTCAAAATCAGTGGTAACAGGAGGCCCTTTACGCAGTGACCATGAATATGAGCTACACGAGGTTCGCTTTCACTGGGGAAGAGAAAACCAGCGAGGCTCTGAGCACACAGTTAATTTCAAAGCTTTTCCTATGGAGCTTCACCTAATTCACTGGAACACTGCGCTGTTCAGCAATATTGACGAAGCCCTGGGGAAGAGAAATGGGATTcttattattgctttatttgtacAGATAGGAAAGGAACATCTAGGACTGAAGGCTATTACAGAGGTCCTTCAGGATATACAATACAAGGGGAAGACAAAACTCATTCCGTGCTTTAATCCCAACACATTGCTGCCAGACCCTCTCCTTCGGGATTATTGGGTTTATGAGGGCTCTCTCACCATGCCTCCTTGCAGTGAAAATGTCACATGGATATTATACCGTTATCCTTTGACGGTGTCACAGATGCAGATAGAGGAGTTTCGAAGACTGAGATCCCACATTAAAGGTGCCGACCTGGCTGAGGGCAATGATGGGATGTTGGGAGACAACTTCAGGCCTACGCAGCCCCTGAGCGATAGAGTAGTCAGAGCTGCTTTCCAATAG

Function

symbol description
ca8 Predicted to enable hydro-lyase activity. Acts upstream of or within cerebellum development; chordate embryonic development; and swimming behavior. Is expressed in several structures, including brain; digestive system; hatching gland; hindbrain neural plate; and pleuroperitoneal region. Used to study cerebellar ataxia, mental retardation and dysequlibrium syndrome. Human ortholog(s) of this gene implicated in cerebellar ataxia, mental retardation and dysequlibrium syndrome. Orthologous to human CA8 (carbonic anhydrase 8).

NR:

description
PREDICTED: carbonic anhydrase-related protein-like isoform X2

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0036269 swimming behavior biological_process
GO:0009790 embryo development biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019392 True 846 mRNA 0.46 8 18149487 18165134

Neighbor

gene id symbol gene type direction distance location
AMCG00019390 NA coding downstream 237964 17897191 ~ 17911523 (-)
AMCG00019391 NA coding downstream 309076 17807455 ~ 17840411 (-)
AMCG00019383 NA coding downstream 527596 17613116 ~ 17621891 (-)
AMCG00019377 NA coding downstream 663388 17481323 ~ 17486099 (-)
AMCG00019379 sdr16c5,LOC106599159,LOC105008851 coding downstream 671730 17459764 ~ 17477757 (-)
AMCG00019399 NA coding upstream 417716 18582850 ~ 18590919 (-)
AMCG00019398 LOC107674130,LOC107714858 coding upstream 429849 18594983 ~ 18605836 (-)
AMCG00019404 NA coding upstream 656029 18821163 ~ 18833805 (-)
AMCG00019403 armc1,LOC108438805,LOC103365692 coding upstream 823772 18988906 ~ 19004537 (-)
AMCG00019405 pde7a,LOC107656157,LOC107705260 coding upstream 852221 19017355 ~ 19037399 (-)
G33686 NA non-coding downstream 376162 17743162 ~ 17773325 (-)
G33665 NA non-coding downstream 525261 17623960 ~ 17624226 (-)
G33637 NA non-coding downstream 714896 17430306 ~ 17434591 (-)
G33603 NA non-coding downstream 823029 17325269 ~ 17326458 (-)
G33586 NA non-coding downstream 829342 17315548 ~ 17320145 (-)
G33758 rab2a non-coding upstream 13955 18179089 ~ 18198157 (-)
G33765 NA non-coding upstream 50474 18215608 ~ 18216742 (-)
G33830 NA non-coding upstream 441007 18606141 ~ 18615254 (-)
G34006 NA non-coding upstream 1301942 19467076 ~ 19480968 (-)
G34148 NA non-coding upstream 2313123 20478257 ~ 20549700 (-)
G33381 ube2v2,LOC107732116 other downstream 2428035 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 3157491 14951842 ~ 14991996 (-)
G33163 NA other downstream 3591197 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 4484257 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 4961195 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 219733 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 1129678 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 1277261 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 2578396 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 4505513 22670647 ~ 22744182 (-)

Expression


Co-expression Network