AMCG00019394


Basic Information

Item Value
gene id AMCG00019394
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18231215 ~ 18239613 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019394
ATGGGTGGCAAAGAGATGGGCCAGGTTGAGAACTTGAAGCTCGGCGGGGGGAAGCCGCGGGCTGACGAGAGGGAAGGAAGCATGGCGGACCCTGGAATGATGAGCTTGTTTGGGGATGATGGGAAtctgttcactgaagggcttgAAGGCCTGGGTGAGTGTGGCTACTCTGAGAGCCAGGTCAATACCTTGGGCCAGCAGATGCCCATTGATCAGGGCTACGGGTCATTACCTTCGTCCCTTCACCATACAACGCAGGCCACGTCTGGCCAGGGTCAGCCCAAGCTCAGCCACTTTGACCACTTTGGCCAGTATGAGCAGCCGAAGATGCATTTGATTGAGCAGCAAGGGGGTCGTATGCTTGGCAGTGCACCTGGGAATGGAATGTCCTCCCCTCATTCGCAGTACCACAATCCCCCACCGGTCAGCCATGGCGGTGGTGCACAAATGGGAGTCTATCCTGGCCTACAGGGAGAAAGGCATGGTCAACCTTTTGTAGACAGTGGCTCTATGTGGGGACCCAGAGCTGTGCAGGTCCCTGAACAGGTTCGACCCCCCTTCCAACAGCAACAGCCTCCTCCCCAGCAGTCTGGCCCTCCTGGACCACAAGGCCACGTTCAGCAGATGGGCCCTTACATGGCCCGGGGGGATTACACCATGCAGCCACACAGCCAGACACCCACACCTCCCAGAATTAACCAGTTCTCCCAAGGCCCGCCGCAGGAAGGCAGCCGAGGACCTACAGCCAACCATTTCATGGGTCACATGGCCCCACAGCAGAACCCCAACCTGGTGGGCCCCCCCATGCGCCACTCAGTgcagcagcagccccagcaGTTCCATCACCGACCCCCTCCGGGTTCCATTCACCCAGAGTCTGTGGCTCACAGTCCCCGCTTCTCGCCCAGCCCCtctcagcaacagcagcagcaagcagTAGCAGCAGGCAGACCCCAGCAAAGCTTGGGGTTCCCCCAGCGCACCCAGCCAGTTCCTTCTCCTGCTGTAAACAACTCAGGGCCGTATCCCCCATACTCTCCATACAACAGCCTCAATCAGGGATTAGTAAACAGTGCAGGGATGAGTCCCAACATGAGCCTTACCAGCAACAGTGCCCCAATGACACAGGGGCCAGTGGTGCCACGTTACCCTAACACTGCCGTGGGTTTCCCACCTGGCGCCCCCCAGGGACTCATGCACCAGCAGCCCATTCATGTAAACCAAATCAACTCCCAGCCTATGCACCCTTCCCAGCAGCAGCCAGCAGCACCCCCACAGCAGCAGCCACCGCCTCAGGGATCCTATGGGTCTCCCCCTCCCATGTCCCCACTGAAGGCCCTGGGCAACCCGGCAGGCACGCCTCCCCCACAGCAGGTTCGACCGGGCAGTGCTGGCATGGGCATGGAGGTAGGTGGCTACCCTAGCATGCCTCACCAGCCTACGGGGGCAATGGGGATGTCTCAGAGGAACATGCCTCCCAGGGGCTTAacgcaacagcagcagcagccacctCCCCCACAGCCGTACATGGGTCTGTCGCCCAGCCAGAGGGACTTGGCAGGGCCTCTACGGCCCCCGGGAGGACTTGGTGGGAGTCATGCGGAGCCACAGGTGTTGCAGGACCAGCGGCTGCTGTCTGGGCCCCCCCAGCAGCCTCAGCACCCAGGGCAACAGCTGCCGCCCCCACTGCCTTTTCAGAAACAGCAGCTGCAAACCTGCTCCCCCATGCAGCAGCCCCCACAGCAGCAGCCACAACCACAAACACTTCTGTCCGTGCATCACCAGAGCTCTCCACCCCCTCACCATCAGCCCTGGGCACAGCAGCACCAGTCGCCACCTACACCCCAGAAAGTGCCTGTTCAACAGGTGAGTAGCGTGTGGGAATAG

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0009303 rRNA transcription biological_process
GO:0021602 cranial nerve morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0014029 neural crest formation biological_process
GO:0030282 bone mineralization biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0001947 heart looping biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019394 True 1887 mRNA 0.61 2 18231215 18239613

Neighbor

gene id symbol gene type direction distance location
AMCG00019389 rab2a coding upstream 24089 18179249 ~ 18207126 (+)
AMCG00019386 sdcbp coding upstream 426770 17799605 ~ 17804445 (+)
AMCG00019384 NA coding upstream 437628 17783334 ~ 17793587 (+)
AMCG00019385 LOC108412264,LOC105893799,LOC107718110,LOC107693703,LOC107722516,LOC107691428 coding upstream 466549 17760073 ~ 17764666 (+)
AMCG00019387 NA coding upstream 492563 17724423 ~ 17738652 (+)
AMCG00019393 chd7,LOC107585562,LOC107688517,LOC107718105,LOC107589837,LOC106568873 coding downstream 18196 18257809 ~ 18296221 (+)
AMCG00019395 LOC102793628,LOC103377196,LOC107098905 coding downstream 97938 18337551 ~ 18378055 (+)
AMCG00019400 nkain4,LOC107724178 coding downstream 277526 18517139 ~ 18525098 (+)
AMCG00019397 LOC107666630,LOC107590209,LOC107586709,LOC107705256,LOC107721902,LOC107663693 coding downstream 368136 18607749 ~ 18661468 (+)
AMCG00019401 bhlhe22 coding downstream 571267 18810880 ~ 18811692 (+)
G33750 NA non-coding upstream 86511 18143496 ~ 18144704 (+)
G33634 NA non-coding upstream 798587 17430953 ~ 17432628 (+)
G33615 NA non-coding upstream 806317 17422624 ~ 17424898 (+)
G33585 NA non-coding upstream 911180 17315673 ~ 17320035 (+)
G33521 NA non-coding upstream 1172995 17057586 ~ 17058220 (+)
G33794 NA non-coding downstream 145271 18384884 ~ 18389982 (+)
G33795 NA non-coding downstream 155788 18395401 ~ 18395619 (+)
G33796 NA non-coding downstream 159403 18399016 ~ 18399743 (+)
G33800 NA non-coding downstream 191751 18431364 ~ 18438265 (+)
G33809 NA non-coding downstream 211004 18450617 ~ 18450841 (+)
AMCG00019376 NA other upstream 778556 17449320 ~ 17452659 (+)
G33406 NA other upstream 2149272 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 2604260 15554819 ~ 15626955 (+)
G33283 NA other upstream 3061374 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 3744509 14439253 ~ 14486706 (+)
AMCG00019402 NA other downstream 765411 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 1045923 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 1211634 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 2367861 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 4376010 22615623 ~ 22643226 (+)

Expression


Co-expression Network