AMCG00019395 (LOC102793628,LOC103377196,LOC107098905)


Basic Information

Item Value
gene id AMCG00019395
gene name LOC102793628,LOC103377196,LOC107098905
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18337551 ~ 18378055 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019395
GAGCTTCCATATGGAAAGGAGGTAAAGGAGATGTATGGAGAAATACAGGTGGAGACATTTCAATATGAAAGCATGAAGCCTTTCATTCGCCTTGTGCCAGTGAATACTAACGAGTGGAGTTACCCTGCGAGTAACAAAATGACCCATTTACAAGCTGGACTTAGTTCTGAGACTATAGATAAAGCTCGTTTAGAACTGAACGAGAACCCGGACACCCTGCACCAGGACATCCAGCAGGTCAGGGACATGGTTATTACCCGACCTGATATTGGATTTCTGCGCACAGATGACGCTTTCATTTTGAGGTTCCTCAGAGCAAGGAAATTTAATCAGCTGGAGACCTTCAAACTGCTGGCCCAGTATTTCCAATACCGTCAGCAGAATCTGGACATGTTTAAAAGCTTTAAGGCAGATGACCCAGGGATCAAGCGTGCCTTGATGGATGGCTTCCCAGGTGTCTTGGAAACTCTTGATCAATATGGCAGGAAGATCCTCATCCTCTTTGCTTCCAACTGGGACCAGAGTAGGAACTCCTTCATTGACATCTTGAGGGCCATCCTCCTGTCCCTGGAAGTCCTGATTGAAGATCCAGAGCTGCAGATCAACGGCTTCATCTTAATAATTGACTGGAGCAACTTCTCATTCAAACAAGCCTCCAAGCTCACCCCAACCATTCTCAAACTGGCCATAGAAGGGCTACAGGACAGTTTCCCAGCTCGCTTTGGAGGGATCCATTTTGTCAATCAGCCGTGGTACATCCATGCTTTATATACCATAATAAAGCCCTTTCTTAAAGACAAGACCAGGAAACGGTTTGGGGGGACACTTCCTCCCTATGACATGGGGACATGGGCACGGACATTATTAGGGCCAGATTACAATGATGAGACAGAATATACTCACACGTACAACGCACTTCATGTGAAGCAAGCCCTGGGAAATTCTGACAGGGAATGTCTTGAAAAACATATGAAAAGGTCTCAGTCAGTGGTTGAACCTGGAACACTAAAGCACGAGGAAAGAGATGATGATAACACCCAGCCCCTGCTAGCTCTGGACTGA

Function

NR:

description
PREDICTED: clavesin-1-like, partial

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019395 True 1062 mRNA 0.46 6 18337551 18378055

Neighbor

gene id symbol gene type direction distance location
AMCG00019393 chd7,LOC107585562,LOC107688517,LOC107718105,LOC107589837,LOC106568873 coding upstream 41330 18257809 ~ 18296221 (+)
AMCG00019394 NA coding upstream 97938 18231215 ~ 18239613 (+)
AMCG00019389 rab2a coding upstream 130425 18179249 ~ 18207126 (+)
AMCG00019386 sdcbp coding upstream 533106 17799605 ~ 17804445 (+)
AMCG00019384 NA coding upstream 543964 17783334 ~ 17793587 (+)
AMCG00019400 nkain4,LOC107724178 coding downstream 139084 18517139 ~ 18525098 (+)
AMCG00019397 LOC107666630,LOC107590209,LOC107586709,LOC107705256,LOC107721902,LOC107663693 coding downstream 229694 18607749 ~ 18661468 (+)
AMCG00019401 bhlhe22 coding downstream 432825 18810880 ~ 18811692 (+)
AMCG00019408 dnajc5b,LOC107656153,LOC107586796,LOC107721861,LOC107663636 coding downstream 703664 19081719 ~ 19089121 (+)
AMCG00019406 trim55b,LOC107586797,LOC107705202,LOC107663638,LOC107656154,LOC107590338,LOC107721936 coding downstream 718681 19096736 ~ 19119509 (+)
G33750 NA non-coding upstream 192847 18143496 ~ 18144704 (+)
G33634 NA non-coding upstream 904923 17430953 ~ 17432628 (+)
G33615 NA non-coding upstream 912653 17422624 ~ 17424898 (+)
G33585 NA non-coding upstream 1017516 17315673 ~ 17320035 (+)
G33521 NA non-coding upstream 1279331 17057586 ~ 17058220 (+)
G33794 NA non-coding downstream 6829 18384884 ~ 18389982 (+)
G33795 NA non-coding downstream 17346 18395401 ~ 18395619 (+)
G33796 NA non-coding downstream 20961 18399016 ~ 18399743 (+)
G33800 NA non-coding downstream 53309 18431364 ~ 18438265 (+)
G33809 NA non-coding downstream 72562 18450617 ~ 18450841 (+)
AMCG00019376 NA other upstream 884892 17449320 ~ 17452659 (+)
G33406 NA other upstream 2255608 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 2710596 15554819 ~ 15626955 (+)
G33283 NA other upstream 3167710 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 3850845 14439253 ~ 14486706 (+)
AMCG00019402 NA other downstream 626969 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 907481 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 1073192 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 2229419 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 4237568 22615623 ~ 22643226 (+)

Expression


Co-expression Network