AMCG00019410 (vcpip1,LOC106599449)


Basic Information

Item Value
gene id AMCG00019410
gene name vcpip1,LOC106599449
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19236197 ~ 19253413 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019410
cgataaaaaaaaagaaccgcTTCcgtgttgttttggttttgcaaTTGAGATAAATAACAGCTGCGTAAGGTGAAACGGAATTGATAAATCGCCGGTGAGTAGTCTATAATGGTTTTCTAAAGACAACACACTATAACAATTGTTTCGCAAAAATGTCTTTGCAGCAGGGGTTGAAGAAGAAGGACAAGCGCATTTTGTCAGGTACCTGCCCGGACCCGAAATGCCAGGCGAGGCTGTTCTTCCCAGCCTATGGCTCGGTTAGTATTGAATGTACTGAGTGCGGGCAGCGGCATGAACAGCGAAATCTCCTAAAAGTGGAAGAAGTCACTGATCCGGACGTGGTGCTTCATAATTTACTAAGAAATGCCCTTCTCGGCGTTACCGGCGCCCCCAAAAAGGGATCCGAGTTAGTCAAAGTGATGGGGCTCTCCAACTACCACTGTAAGCTGCTATCTCCAATCCTAACCAGGTACGGAATGGATAAACAGACAGGGAAAGCCAAGTTATTAAGAGAGATGAACCAGGGAGAAATGTTTGATTGTTCACTGCTGGGGGACAGGGCTTTTCTCATCGAGCAGGAGCATGTGACCACTGTTGGCTATGGCAAAGATCGCTCTGGCAGCCTTATTTATCTGCATGACACTTTGGAGGAGGTGAAGAAAGTCAACTGGAATAAAGAGTGCCTCATTCCTGTGCATGTCGATGGGGATGGACACTGCTTGGTCCATGCTGTGTCTAGGGCACTGGTGGGCAGAGAACTATTCTGGCATGCCCTGCGCGAAAACTTAAAGCAAAACTTCAAGCAAAACCTGGATCGATACAAGGCTCTCTTTCAAGACTTCATCGATGCAGCAGAATGGGAGGACATTATCAATGAGTGTGATCCCTTATTTATTCCACCTGAGGGGGTGCCCCTAGGACTGCgtaatattcatatatttggGTTGGCTAATGTCTTGCACCGCCCCATCATTTTGCTTGACTCGCTGAGTGGGATGAGGAGCTCAGGGGACTATTCTGCCACTTTCCTCCCAGGGCTGGTACCAGAGGAGAAGTGCAAAGGGAAGGATGGGCAGTTCAACAAGCCCATATGCATCGCCTGGAGCAGCTCAGGTCGCAACCACTACATTCCACTTGTTGGAATAAAAAGTGCCCCTCTGCCGAAATTGCCTGCAAGGCTGCTCCCAAAGGCCTGGGGCGTACCACAAGAACtcattaagaaatacattaaactggAGACCGATGGGAGCTGTGTAATTGGCGGAGACAGAAGCTTGCAGGACAAGTACCTGATGAGACTAGTTTGTGCCATGGAAGAGGTCTTTATGGATAAGCATGGCATCCACCCCTCGCTGGTGGCGGACGTGCATCAATATGTGTACAGAAGGACAGGTGTAATAGGAGTTCAGCCTGAAGAAGTTACAGAGGCTGCGAAAAAAGCTGTAATGGAAAACCGCCTTCACCGCTGCTTGATCTGCAATGCACTTTCAGAACTCCACGTGCCTCCAGAGTGGCTAGCCCCTGGGGGCAAGCTCTACAATCTGGCCAAAACCACTCATGGGCAGCTGCGGCCTGACAAGAATTACAGCTTCCCCCTGAACAACGTTGTATGCTCTTATGACCCTGATAGGGATGTTTTGCTTCCTGACTACAAGCTGAGCCAATTAAATGCATGCAACTGGTGTCATGGCACTTCTGTGCGCCACGTCCGCGGGGATGGCTCTGTGGTATACTTGGATGGGGACAGAACCAACACCCGCTCTCAAGGGGGCAAGTGTGGCTGTGGGTTCAGGCATTTCTGGGAAGGGAAGGAGTATGACAATCTGCCCGAGGCCTTCCCCATCACTCTGGAATGGGGAGGCAGGGTGGTGAGGGAGACGGTGTACTGGTTCCAGTATGAGACTGATGCCAGCCTGAACAGCAATGTTTATGATGTTGCCATGAAATTGGTCACCAAACATTTCCCAGGCGAGTTTGGGAGTGAGATCCTGGTGCAAAAAGTTGTGAACACCATTTTAAATCACACTGCCAAGAAGAATCCTGACGAGTACAACCCTGTGGCTATCGATGGGGCGCACGCACAGAGGCTGGGTGAGGTCCTGGAAGGGCAGGCAGCTGGGGAGGTGCAGCCTCCAACCAAAATAATCTTGACTGGCCAGAAAGCAAAGACCCTACATAAAGAGGAGCTTAACATGAGCAAAGCAGAGCGACATCTGCAGCAGAGCATCAGCGAGCACGCCTcagtcacacaaaaaaagaggaCGGACAAGCTGAAGCAGGAGCAGAAAGGTCAGATGAGACCTGCTTCTCCAGGCCCCGTCCGAGAAGCAACCTCTTCAACCCCTGCCACCCCCACCAAAGCTCCTTACTCGCCTAAGTCTAATAAGGAGAAAAAGATCCGTGTGACCACCAATGATGGACGGCAGGCCATGCTGACACTCCAGGCAGAGACTACTTTCTCAGAACTCCAGAAGAGCATTGCCAAAGAATTTGCTGTGCCTCCAGCCCAGCAGTGTATTCGCTATGACTTCCCTCCGAAGGAACTTTCCCCCCCTAAGGAGGGGCAGGAGAATGAGCCAGTGCCCCTGCAGCATGGGGACAGGGTGACTCTGGAGGTGGTGAGGGATCCCAAGGAGAAAGAAGTGGCAGCCCCTGCtgcctccacctccacctccacatCTGCCCTCCATGCAGTCAAGAGCGAGGAGCCTGCCTCTTCCAGCAGAGTGAACTCCAGAGAGCTGCAGGATAACATTGATCTTGAGATGTCCTCCCTCTGCCTTCTAGCAACCTTAATGGGAGAGGATGTCTGGTCTTACGCAAAGAAGTTGCCTCACTTATTTCAGCAAGGTGGAGTTTTCTACAACATCATGAAGAAAGACATGgGTTTGATGGATGGCAAACACTGCACTCTGCCCCACATGCCAGGGAAGACCTTCGTGTACAACGCGTCCGAGGATCGCCTGGAGCTGTGTGTAGACACTGCAGGACATTTCCCTGTGGGCCCTGACGTGGAGGACCTGGTGAAAGAGGCTCTGACACAGCTGCGCTCTGAGGTGGCCTCCAGGAGCAGAGAGGGCAGCCCTTCCCATGGCTTGCTGAAGCTCGGTAGCGGAGGAGTGGTCAGGAAGAAGTCCGAGCAGTCGCACAATGTAACTGCCTTCCAGGGCAGAGGCCACTCTCTGGGGAGCGCAACCGGCAGCCCACCCCCGGATCAGAGGCCCAAGGAGAAGCCCATCTCACGGAAGCACAGCAGCGGGGTGGACCTGAGCGGCAGCGTCTCCAAGCAGGAGGCGGATCTCTCCGACATCTCCGAGGACACGGCCAAGGAGCTGGTTCGCATGGCCCCCGGGTTTGTGACCATGAAGGATGGAAGGCACCTGGACCCCAGCATGATTGAGGCCCAGCGCAAAAAGCTGCAGGAGATGGTGTCCTCCATTCAGGCCTCCATGGACAGGCATTTACGAGAACAAAGCCTAGGGGATTCTGGGAGTGGGGGAGACGCCACTCCAAGGAAGGCAGATGCTGGAACCTCAACAAGTAGGACAGAAAGTACCAGAATGACTGCGTCCGAGTCTGGCTCGGGGACCGGGGGCCACAAGACTTCAGGGATGGAAGTGACTGCTGGCATAAGCAGCATGGTGGAAATGACTGCAATATATTCGTCAACGCTGCAACTGGCTTACACTGGGGCCTGCACTTTAAATGAACTGCAATTCCCACAATCCTTCGCGGATCCATTCCAGCCCCGCCCATATCACGCTCCCCCGCCTCCGGCCAATCAGCGCCCACACCGCATGCGCAGATTCAAACCCTCTTCCAGAAGGAGGCTGGGCGCGAGAATCGGCGGGATGCACAAAAAAAATCCGAAGTACGAAAATAAGATCAGTGTGCAGTCCAGGAAGGCAGGGCGAGCCGTCATCGAGGCGGGTTAA

Function

symbol description
vcpip1 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Orthologous to human VCPIP1 (valosin containing protein interacting protein 1).

NR:

description
PREDICTED: deubiquitinating protein VCIP135

GO: NA

KEGG:

id description
K11861 VCPIP1, VCIP135; deubiquitinating protein VCIP135

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019410 True 3935 mRNA 0.53 4 19236197 19253413

Neighbor

gene id symbol gene type direction distance location
AMCG00019409 NA coding downstream 6728 19218610 ~ 19229469 (-)
AMCG00019412 NA coding downstream 117300 19118397 ~ 19118897 (-)
AMCG00019405 pde7a,LOC107656157,LOC107705260 coding downstream 198798 19017355 ~ 19037399 (-)
AMCG00019403 armc1,LOC108438805,LOC103365692 coding downstream 231660 18988906 ~ 19004537 (-)
AMCG00019404 NA coding downstream 402392 18821163 ~ 18833805 (-)
AMCG00019416 tcf24 coding upstream 53022 19306435 ~ 19307973 (-)
AMCG00019418 NA coding upstream 64290 19317703 ~ 19323473 (-)
AMCG00019421 cops5,csn5 coding upstream 78588 19332001 ~ 19339682 (-)
AMCG00019420 arfgef1,LOC107584936,LOC107727224,LOC107595140,LOC107758297 coding upstream 114559 19367972 ~ 19400055 (-)
AMCG00019429 slco5a1,LOC102798443 coding upstream 628316 19881729 ~ 19895839 (-)
G33830 NA non-coding downstream 620943 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 1019455 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 1038040 18179089 ~ 18198157 (-)
G33686 NA non-coding downstream 1462872 17743162 ~ 17773325 (-)
G33665 NA non-coding downstream 1611971 17623960 ~ 17624226 (-)
G34006 NA non-coding upstream 213663 19467076 ~ 19480968 (-)
G34148 NA non-coding upstream 1224844 20478257 ~ 20549700 (-)
G34277 NA non-coding upstream 2184502 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 2292795 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 3865388 23118801 ~ 23120960 (-)
AMCG00019396 NA other downstream 794216 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 3514745 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 4244201 14951842 ~ 14991996 (-)
G33163 NA other downstream 4677907 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 5570967 13662116 ~ 13665230 (-)
AMCG00019417 NA other upstream 41399 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 188982 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 1490117 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 3417234 22670647 ~ 22744182 (-)
G34470 NA other upstream 3894448 23147861 ~ 23199608 (-)

Expression


Co-expression Network