AMCG00019415


Basic Information

Item Value
gene id AMCG00019415
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19285536 ~ 19294208 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019415
TCTCAGCAAAGTGTGGCAGTGTATCGCTTTTGTATCCATGTAAATCCTTCTGATCTGATCGAAATAGATGCTAGACTTGGGAACTGCGTGTTGCATGACCCTGTTAAAGCTTCTGGCCTTTTTCAGTCTGTGTGTTTCATTTCTATCAAGACGCTCTCGCTCATTgaagaaatacacacagaaaaccAGgttaatgTTGTGCTGAAGCTGACACACTTGCCCCCCTTCAAAAACTATTTCCTGGATCTGCGTGACTTCCCCCGTGGGTACGGCCCTGTGAGGCCCTTTGTAATGGAGGGCTTGGTGATGGCCATGACTTGCGTGACAAAGTATACCCAGGGCGCCAGGTTCCTGTGTACTGAGAACACCTGCCCCTGTTCCAAAGGCTTTCATAATATCCGGGTTCATGCTCCCGGAGCCACAGAGTCAGCCACCGTGAGGAACGACTTCAGCTGTGCATTGTGCTGCTCTCCGCTTAAAGAGGATGTCAAGTTCAGAGTGCTGGGTGACAAACAGCTGGTGGAAATGATCCACGCAGGAGCCCTTGATGTCCTAAGAACACATCCTCTGGACTCCTTTAGGTATCAGTCTATGACTGTATTTCTGCGAGGTCCTTCATTCATCAGTAATAATTTCCAGGCTTTGCTGGGGGTCACTTCCTGCTCTCCGTGGAGATTTCCTGCCATCATGGCGAATGTTCTTGGGTCACACGTAGTTCCACCTGGCATGTACACCACCCTGAAGCTGTGCCTCTTACTGAGCCTGGTACAGACCAGCGCAgaggacagagacacactcGGTTACCTGGATGTACTGGCTTTGACTACCGACAGCCTCATAATAGACAGGCTACTGACCTACAGTCTTGGCCTTGTCCCTCGAGCGATACGCCACTGGTCGTTGGGTGAGATGTTTCCCTCGGTGACTAAAGACCAGCATGGAACTGGGACTGCCAACATACAGGCTGGCTCTGCCCTGCTCGCCACTGGAGGAATCTGCTTCATAGGAGACCTTGCCTCCTACAAGAGAGAGAAGCTGGAATTACTTCAGTCAGGTGCAATTCCCTCCCAGATGAGCGATGCTTTTGGTCTTGTGATCAACTGTCAAGAAGCTGCCAGCGAATGGTCATCAGTGTTAACTGTGCACACCCTGCGTCGGGCCATGAGGCCGAGAGAGCCCCCATATCCAGCCTGTATGCAGTTCACAACGGACGATTATGAAGCGTTCCTTGCCTATGCCAGAGGATTGGAAGTGGAGCTGTGTCCTGAAGCGAGGAAACTGATTCACGGCTACTACATGGCCAGCCGCAGAGTCCGCTCAGACACAGCCAAACTGCCTGCATCGTACATCAAGCTCTTGATTTCTTTGGCAGAAGCACATGCCAAGCTCTGCCTGAGAAGCAGGGTGCTTGAGGAGGACACAGTCATCGCAGTCCTGCTGTGTGAGAACTCCCTCACCCTGAAACACGGTGCCTCGGCGCTGGTCATACCACCTAATGCTGTATTTCCATGTGACCTGCATGACCAGGACTCTCTGCACAGGAGGGACGTTACCTTGCAGCAGGTCCATCAGCAGATCCTGCAGTTTGTGTTCTCCTACGCACCTGGGGCCACAGCTTACATTTCTGAA
>TU42509
CTTGGCTTAGGGGTGGTCAGTGTGTCATCTTTTTTTCCTTGGGAATTCCAGGTGCCTCGGCGCTGGTCATACCACCTAATGCTGTATTTCCATGTGACCTGCATGACCAGGACTCTCTGCACAGGAGGGACGTTACCTTGCAGCAGGTCCATCAGCAGATCCTGCAGTTTGTGTTCTCCTACGCACCTGGGGCCACAGCTTACATTTCTGAAGAGTAACTTACACTGCAGTGCATGCAGTTCTGAAAGGTTTTGACAGTGCATTACCTGTCCAGCATTCAAGGTTTTATCCTCCACTACATAgttgtgtttgaaaatattcaCACCATTCTTTT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019415 True 1629 mRNA 0.52 11 19285536 19294086
TU42509 False 334 lncRNA 0.47 1 19293875 19294208

Neighbor

gene id symbol gene type direction distance location
AMCG00019413 sgk3,LOC107666631,LOC106579527 coding upstream 1804 19269809 ~ 19283732 (+)
AMCG00019407 adhfe1,LOC101480322 coding upstream 83858 19191577 ~ 19201678 (+)
AMCG00019411 rrs1,LOC106579528,LOC107590198 coding upstream 95223 19189279 ~ 19190313 (+)
AMCG00019406 trim55b,LOC107586797,LOC107705202,LOC107663638,LOC107656154,LOC107590338,LOC107721936 coding upstream 166027 19096736 ~ 19119509 (+)
AMCG00019408 dnajc5b,LOC107656153,LOC107586796,LOC107721861,LOC107663636 coding upstream 196415 19081719 ~ 19089121 (+)
AMCG00019414 NA coding downstream 46038 19340246 ~ 19366528 (+)
AMCG00019427 prex2,LOC107686687 coding downstream 242626 19536834 ~ 19601640 (+)
AMCG00019423 prex2,LOC107566194,LOC107741010,LOC107686687,LOC107758281 coding downstream 320708 19614916 ~ 19625804 (+)
AMCG00019424 cunh8orf34,zgc:162928,LOC105890107,LOC107741009,LOC107686688,LOC107566197,LOC107758299 coding downstream 368166 19662374 ~ 19665136 (+)
AMCG00019422 zgc:162928,c23h8orf34,LOC105890107,LOC107686688,LOC107758299,LOC107585009,LOC107695418 coding downstream 386560 19680768 ~ 19688614 (+)
G33913 NA non-coding upstream 75826 19207194 ~ 19209710 (+)
G33874 NA non-coding upstream 358249 18927047 ~ 18927287 (+)
G33812 NA non-coding upstream 701832 18576495 ~ 18583704 (+)
G33810 NA non-coding upstream 834133 18451133 ~ 18451403 (+)
G33809 NA non-coding upstream 834695 18450617 ~ 18450841 (+)
G34084 NA non-coding downstream 777128 20071336 ~ 20071564 (+)
G34086 NA non-coding downstream 780970 20075178 ~ 20078454 (+)
G34093 NA non-coding downstream 801110 20095318 ~ 20096450 (+)
G34183 NA non-coding downstream 1338869 20633077 ~ 20635272 (+)
G34192 NA non-coding downstream 1378779 20672987 ~ 20746971 (+)
AMCG00019402 NA other upstream 264124 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 1832877 17449320 ~ 17452659 (+)
G33406 NA other upstream 3203593 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 3658581 15554819 ~ 15626955 (+)
G33283 NA other upstream 4115695 15164348 ~ 15169841 (+)
AMCG00019428 LOC107595150 other downstream 157039 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 1313266 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 3321415 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 3891608 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 3939062 23233270 ~ 23248099 (+)

Expression


Co-expression Network