AMCG00019416 (tcf24)


Basic Information

Item Value
gene id AMCG00019416
gene name tcf24
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19306435 ~ 19307973 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019416
ATGGACAGCGGCGCCGCTCCAGTCATCATAATGGACGACAGCCCGGCCtccagccccagctccagcccCGGCCCGGACGTGGACGCCCTGCTGGGCCCGGACCGGCGGCGCTCGGAGGCGCTGTCCCGCTCCAGGGGGCTCCGTCCGGCCAGCCTCGGCGGCAGAGGGCGGCCCGCCGCAGCCAACGCCGCCCGGGAGAGGAGCCGAGTGCAGACGCTGCGACACGCTTTCCTGGAGCTCCAGAGGACCCTGCCCTCCGTGCCCCCGGACACCAAGCTGTCCAAGCTGGACGTGCTGATCCTGGCCACCACCTACATCGCGCACCTGACCCGCACCCTGCAGGAGGACGGCgcggaggagggagaggggaccCGGCCGGCGGAGGTGCTGCACTCCCTGAAGGGCGAGGGGTACCTGCACCCGGTGAAAaaatggcCAATGCGATCCCGGTTGTACATTGGTGCCACAGGACAGTTTCTGAATAATTCGGGTCAGGCTGAAACCTCAAACCAAGGCGAGTCCTCGACTTCCCAGACGTAG

Function

symbol description
tcf24 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in developmental process and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.

NR:

description
PREDICTED: transcription factor 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019416 True 540 mRNA 0.69 2 19306435 19307973

Neighbor

gene id symbol gene type direction distance location
AMCG00019410 vcpip1,LOC106599449 coding downstream 53022 19236197 ~ 19253413 (-)
AMCG00019409 NA coding downstream 76966 19218610 ~ 19229469 (-)
AMCG00019412 NA coding downstream 187538 19118397 ~ 19118897 (-)
AMCG00019405 pde7a,LOC107656157,LOC107705260 coding downstream 269036 19017355 ~ 19037399 (-)
AMCG00019403 armc1,LOC108438805,LOC103365692 coding downstream 301898 18988906 ~ 19004537 (-)
AMCG00019418 NA coding upstream 9730 19317703 ~ 19323473 (-)
AMCG00019421 cops5,csn5 coding upstream 24028 19332001 ~ 19339682 (-)
AMCG00019420 arfgef1,LOC107584936,LOC107727224,LOC107595140,LOC107758297 coding upstream 59999 19367972 ~ 19400055 (-)
AMCG00019429 slco5a1,LOC102798443 coding upstream 573756 19881729 ~ 19895839 (-)
AMCG00019430 slco5a1,LOC107695420,LOC107758302,LOC107741005 coding upstream 606046 19914019 ~ 19918646 (-)
G33830 NA non-coding downstream 691181 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 1089693 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 1108278 18179089 ~ 18198157 (-)
G33686 NA non-coding downstream 1533110 17743162 ~ 17773325 (-)
G33665 NA non-coding downstream 1682209 17623960 ~ 17624226 (-)
G34006 NA non-coding upstream 159103 19467076 ~ 19480968 (-)
G34148 NA non-coding upstream 1170284 20478257 ~ 20549700 (-)
G34277 NA non-coding upstream 2129942 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 2238235 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 3810828 23118801 ~ 23120960 (-)
AMCG00019417 NA other downstream 4888 19294812 ~ 19301547 (-)
AMCG00019396 NA other downstream 864454 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 3584983 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 4314439 14951842 ~ 14991996 (-)
G33163 NA other downstream 4748145 14491891 ~ 14558290 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 134422 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 1435557 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 3362674 22670647 ~ 22744182 (-)
G34470 NA other upstream 3839888 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 4744038 24052011 ~ 24094664 (-)

Expression


Co-expression Network