AMCG00019417


Basic Information

Item Value
gene id AMCG00019417
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19294812 ~ 19301547 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019417
ATGGCAAGAGACAGAGCTGTAGACCCACGTCGAGCAGGGCGGCCGGGTTTGGTGCAGTTAGTGCCCTTGCTGGAGCTGATGGCCGGTGCATTGATCGACACGTGTTCCGCATGGCCTGGGGGATGTGGCCCTTGTCCCGGCGGGGTGAGGGCTGCAGGCCTCCGGGGAGCAGTGCTGGGTGATTCTGggaAGACCACAGAACACTGGCCACTGGGAAGTTTCTCGGACCTGATCATGGCAGTGGTGGAGAATGACATCGCAGAGTATGGCGGACTGCTCTCGGAGAGGACAACCAAGAATCCATGGAAGAGGTATGTGGAAGAACGTAACTAGTTCTCCTGAATTTGAGAACGGTCTAATTGTTTAGAATTGATTTGGGTATTTTTGGGTACAATTTCTCAGGGTGACAGTGATGTATATCATTTCCATTTGGCTTTGTAGAGTATCTACTGGGACTTCCAGTCTGGATATGCTTAAGTTTTGCAAAGGAACAAATGGttaagtttttaattgtattgatttagcTTTGTAATGGATTGGAAAGTCCATTGGGCACTAGTTCCAAAATGAAAAGTTAATGGTATTGAGGTACTGCAGGACTGCTGTTCCTTGCTCTGCATCTATAGTCGGTGTGGTGCTGCTGGAGCTGTGATGATTTACTTACTTTGCCGTTTACCCATCAGACTTAAAGGGGTGCTGACACTGTGACGATCTGAGTCTCCAGCACCAGCACTGACATGTAGAGCATCTGAAAGCCAGCAGCCCAGAATTGAGTATAGTCAAATAGGCATCGTGACCACCCCAGACATCCTGTTCTAAGgggcttgtgtttttgtttaacgCAAGCACTGATGGGATGGATGACTTCTGATTTCTGTGTTTACCAGGGTTTGGGTCAATTCTACTTTTCCATTCcagttcagttttaatttatttttgccattgaCACTGGGCTCTATTGCAATTGAATTGAAAGGACTTGGAATCGACACCAACCCTGGAGTTTATGTTCGTATTTCACATTATATTAACATGTTTCCTTTTAGGGATGTGAAAATCCTGTGTTTCAGGACTATCTTGTGACCGGACTCACaGGTGAAGACTGAAGACTTCAGTTGTTGGAGGAGCAGTTTCAACCACCCTCGATTGGCTGGATGGCAGTTTCCAGTGTGCAATTAGTCTTTTGCCCATCTTTGAATTCATGTAGAGGTTCTGACCAATAAAGGGATTCGCATTCAATCCAGAG
>TU42512
CCTGAGCAGAGCGCATAAAGACGGCAGTCACGCATGCGCCGCACACTGGAGACGAGCAGCCTGCCAGCATGGCGGCGGCGGCGCCACTCATTTCACAATTGTTGCTACTTTCACCAGGTCTATTGATGTGCTCTGTCGAGAGAAATTGGTCTTCGTGTGAAAGACTGAAACTGTTAGTGACTCCATCATGACAACTTTCCAAATATAGGAAGCGGTGGATGGTGACATTGTGGGGGCTGGAGGACTACTCCAGTGGACCATGggaAGACCACAGAACACTGGCCACTGGGAAGTTTCTCGGACCTGATCATGTCCGCAGTGGATCGTGATGGTGAGGAGCACGGAGGACAGCTGACAGCTAGGCAGTGGTGGAGAATGACATCGCAGAGTATGGCGGACTGCTCTCGGAGAGGACAACCAAGAATCCATGGAAGAGGGATGTGAAAATCCTGTGTTTCAGGACTATCTTGTGACCGGACTCACaGGTGAAGACTGAAGACTTCAGTTGTTGGAGGAGCAGTTTCAACCACCCTCGATTGGCTGGATGGCAGTTTCCAGTGTGCAATTAGTCTTTTGCCCATCTTTGAATTCATGTAGAGGTTCTGACCAATAAAGGGATTCGCATTCAATCCAGAG
>TU42513
CCTGAGCAGAGCGCATAAAGACGGCAGTCACGCATGCGCCGCACACTGGAGACGAGCAGCCTGCCAGCATGGCGGCGGCGGCGCCACTCATTTCACAATTGTTGCTACTTTCACCAGGTCTATTGATGTGCTCTGTCGAGAGAAATTGGTCTTCGTGTGAAAGACTGAAACTGTTAGTGACTCCATCATGACAACTTTCCAAATATAGGAAGCGGTGGATGGTGACATTGTGGGGGCTGGAGGACTACTCCAGTGGACCATGggaAGACCACAGAACACTGGCCACTGGGAAGTTTCTCGGACCTGATCATGGTAAGTGTGAGATGGAaggattttgtgtttgtgacgGGCAGGGTGTTGGAAAGCTGAATAATCCAATGTGTACAGGGCTTGTGGGTTATTCACTGCAGCATCCCACTGGAATAAAGGCAGTTTGTGGGTTGGGCGAGTTCCGTGTAGAGGTGATTAATGGGGAAAGAATGATTTAATGCTGTCCTTTGAACAAAGGGGGCTGATTTCCCTCTGTGGAGAAATGTGCTCTGTGTATCCCTATGATCGTAGGTAAAAGTTCTGCCCCTCTTAGATGAGTTGATGTGTAACATTTCTTATGAGTTTAGTATGAACTCGGAACAGTAGTTAAAGGTGAAGAAATGCTGCCTTTGACCTATTACAACGTACCCCTAGAGTCTCCTGGTCAGTGTTGCTGCTGGATCTGTGATGATTTGCTTCTTTGCCGTTTACCCATCAGACTCTAGCTGGGTTGCTGACAATGCACTTATCTGAGTCTCCAGCACCAATACGGACCTAGGTAGACTGGTGTATCAATGGATCTGGGGTCTTGTACAGAATACTGTCTATATGCTCCCTGCTGTGGCTTCTGCATATgcttttgaagtgttttttcaACAGGTACCAGTGCATCGCTTCATCCAGAACATGGCTAATTTTAAACTGGTTGTTTCAGTCCGCAGTGGATCGTGATGGTGAGGAGCACGGAGGACAGCTGACAGCTAGGCAGTGGTGGAGAATGACATCGCAGAGTATGGCGGACTGCTCTCGGAGAGGACAACCAAGAATCCATGGAAGAGGGATGTGAAAATCCTGTGTTTCAGGACTATCTTGTGACCGGACTCACaGGTGAAGACTGAAGACTTCAGTTGTTGGAGGAGCAGTTTCAACCACCCTCGATTGGCTGGATGGCAGTTTCCAGTGTGCAATTAGTCTTTTGCCCATCTTTGAATTCATGTAGAGGTTCTGACCAATAAAGGGATTCGCATTCAATCCAGAG
>TU42514
CCTGAGCAGAGCGCATAAAGACGGCAGTCACGCATGCGCCGCACACTGGAGACGAGCAGCCTGCCAGCATGGCGGCGGCGGCGCCACTCATTTCACAATTGTTGCTACTTTCACCAGGTCTATTGATGTGCTCTGTCGAGAGAAATTGGTCTTCGTGTGAAAGACTGAAACTGTTAGTGACTCCATCATGACAACTTTCCAAATATAGGAAGCGGTGGATGGTGACATTGTGGGGGCTGGAGGACTACTCCAGTGGACCATGggaAGACCACAGAACACTGGCCACTGGGAAGTTTCTCGGACCTGATCATGGTACCAGTGCATCGCTTCATCCAGAACATGGCTAATTTTAAACTGGTTGTTTCAGTCCGCAGTGGATCGTGATGGTGAGGAGCACGGAGGACAGCTGACAGCTAGGCAGTGGTGGAGAATGACATCGCAGAGTATGGCGGACTGCTCTCGGAGAGGACAACCAAGAATCCATGGAAGAGGGATGTGAAAATCCTGTGTTTCAGGACTATCTTGTGACCGGACTCACaGGTGAAGACTGAAGACTTCAGTTGTTGGAGGAGCAGTTTCAACCACCCTCGATTGGCTGGATGGCAGTTTCCAGTGTGCAATTAGTCTTTTGCCCATCTTTGAATTCATGTAGAGGTTCTGACCAATAAAGGGATTCGCATTCAATCCAGAG

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019417 False 1246 mRNA 0.46 4 19294812 19301235
TU42512 False 636 lncRNA 0.51 8 19294812 19301547
TU42513 True 1288 lncRNA 0.48 7 19294812 19301547
TU42514 False 691 lncRNA 0.51 8 19294812 19301547

Neighbor

gene id symbol gene type direction distance location
AMCG00019410 vcpip1,LOC106599449 coding downstream 41399 19236197 ~ 19253413 (-)
AMCG00019409 NA coding downstream 65343 19218610 ~ 19229469 (-)
AMCG00019412 NA coding downstream 175915 19118397 ~ 19118897 (-)
AMCG00019405 pde7a,LOC107656157,LOC107705260 coding downstream 257413 19017355 ~ 19037399 (-)
AMCG00019403 armc1,LOC108438805,LOC103365692 coding downstream 290275 18988906 ~ 19004537 (-)
AMCG00019416 tcf24 coding upstream 4888 19306435 ~ 19307973 (-)
AMCG00019418 NA coding upstream 16156 19317703 ~ 19323473 (-)
AMCG00019421 cops5,csn5 coding upstream 30454 19332001 ~ 19339682 (-)
AMCG00019420 arfgef1,LOC107584936,LOC107727224,LOC107595140,LOC107758297 coding upstream 66425 19367972 ~ 19400055 (-)
AMCG00019429 slco5a1,LOC102798443 coding upstream 580182 19881729 ~ 19895839 (-)
G33830 NA non-coding downstream 679558 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 1078070 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 1096655 18179089 ~ 18198157 (-)
G33686 NA non-coding downstream 1521487 17743162 ~ 17773325 (-)
G33665 NA non-coding downstream 1670586 17623960 ~ 17624226 (-)
G34006 NA non-coding upstream 165529 19467076 ~ 19480968 (-)
G34148 NA non-coding upstream 1176710 20478257 ~ 20549700 (-)
G34277 NA non-coding upstream 2136368 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 2244661 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 3817254 23118801 ~ 23120960 (-)
AMCG00019396 NA other downstream 852831 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 3573360 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 4302816 14951842 ~ 14991996 (-)
G33163 NA other downstream 4736522 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 5629582 13662116 ~ 13665230 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 140848 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 1441983 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 3369100 22670647 ~ 22744182 (-)
G34470 NA other upstream 3846314 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 4750464 24052011 ~ 24094664 (-)

Expression


Co-expression Network