AMCG00019419 (cpa6,LOC106579545)


Basic Information

Item Value
gene id AMCG00019419
gene name cpa6,LOC106579545
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19442395 ~ 19454969 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019419
ATGATTCACATCTTTTGCCCCTACCTGAATCACATAAAGAGGCCTTCCTTCGAAAGACTGGCCGATGGAGAACAAGTCAATCAGGCATTGCAGTCATACCAATATGACCCTTTAATGAGAAGACTGATGAATCAGCTGTATTTCTACATAAtgcctgtttttaatgttgatgGCTACCATTTCAGCTGGACAACgGATCGATTCTGGAGGAAAACTAGatctaaaaatgcaaaatattactGCCGTGGTGTAGACGCCAACAGGAACTGGAAAGTAAAGTGGTGTGAATCCGAGCCGGAGGTGAAGGCTGTTGCCAACTTCCTGCGCAAACAGAGGAGGCGTGTGAAAGCCTACATTTCCATCCACGCCTATGCCCAAATGCTGCTCTACCCTTACTCCTACAAATATGACACCATTCCCAATTTCAGCTGTGTTgAATCAGCAGCTCACAATGCTGTTGCTGCCCTTTACTCTGCATATGatgTGAGTTCTGGCAGTTCTATGGACTGGGCCTACAAAAACGGCATCCCCTATGCCTTCGCGTTCGAGTTGCGTGACACCGGCTATTTTGGATTCCTCCTCCCAGAGTCTCTGATTAATCCGACATGTACTGAGACCACTCAGGCTGTCAAAACCATCTCCTTGAGCCTGCTGAAGAAGTGTTCCTGA
>TU42573
GCATTGCAGTCATACCAATATGACCCTTTAATGAGAAGACTGATGAATCAGCTGTATTTCTACATAAtgcctgtttttaatgttgatgGCTACCATTTCAGCTGGACAACgGATCGATTCTGGAGGAAAACTAGatctaaaaatgcaaaatattactGCCGTGGTGTAGACGCCAACAGGAACTGGAAAGTAAAGTGGTGTGGAAGGGGCCTCGTCACACCCCTGTGATGACACGTACTGCGGGGCTTTCCCAGAATCCGAGCCGGAGGTGAAGGCTGTTGCCAACTTCCTGCGCAAACAGAGGAGGCGTGTGAAAGCCTACATTTCCATCCACGCCTATGCCCAAATGCTGCTCTACCCTTACTCCTACAAATATGACACCATTCCCAATTTCAGCTGTGTTgAATCAGCAGCTCACAATGCTGTTGCTGCCCTTTACTCTGCATATGGTGTAAAGTACAGATATGGCCCTGCATCAACTACTTTGTatgTGAGTTCTGGCAGTTCTATGGACTGGGCCTACAAAAACGGCATCCCCTATGCCTTCGCGTTCGAGTTGCGTGACACCGGCTATTTTGGATTCCTCCTCCCAGAGTCTCTGATTAATCCGACATGTACTGAGACCACTCAGGCTGTCAAAACCATCTCCTTGAGCCTGCTGAAGAAGTGTTCCTGAGTGATGGGCAATATCATTACCACAGGTTGGACTCAGTCATCCCCACAACACAGACAAGAAAGAGAGCTATATCattccaattatgatatttggTCAGGAAacctttgttttctgtatgttaacagtatttttatatttttttttactgcaagtgtattgaaataattaacttggttttataaatgtttgagATAAACTATTCTTGATTTATCTGTGTTGGTGCCTGGCTTTACAAGTCAATTAGTCTCACAAGAATCATGCTTTTGAAATTCACATCAGTGTACACTGGTAGGGGCACAAACGAACTGAGATTCTaagcgtttttgttttttttgttacatttaacatcCTTATTGGGTTACTTCCATTttggaataatatattttcattttcctaaagaaaaaatgtaacagtctcatgtttaaaacaatgaaaatgacagcaataataataatagtaatgtacaagaagaaagagaagaagtTATGTGAGAGAATAATAGAGGAATCTGACTAATTGGTCATAGGATAGGAAGGCTTGTAATTCACTGCAGAATTCTTcccatgtgtttattttttatacaacaaaaggaaatcattaaggtttacatttgaaagagaaaaagggGATTAGGCAGCACGCTTTATTCTTATCCAGTCCCACATGCTGTCATCATAGTTGAAAAGCCTGAGATTTCAAACCATGTCACTCAGCACAAGCACTTGGAACGAGGTGAATATACACAGAATATTTCACATTCTGGGTATTGACAGCACTTTTTAAACAGctcatatttttttacacaaatgcaaatctacccagattaaaataaacagttaatgcaatcaaatgaatgaataactgGAACATGAATACTGTGTGAGTTCCTATCACATTAAcccattttagaaaacaaaggtAGCAATACCTTTGCAGTAAGCCAACATACTGGAGTCtttgtatattataatttgtttgtcaGATTACAgatgaattatttgtatttgaagaaaataattgagCCTATTGGTTTCTGTTATAGATTTTTCTTGTTGTCTTCTGCTTTGTTCTATATAATAATTCATGGATTATGTAATCTAAGAAGATTATACTATGAAAAGGCAATGAAAAACACACGTTTGAGACATCTTTACCATATCTTAAATCAAAAAAAATTATCTGCATATTCGACTCTTAAGTATGCATACTGCAGAGGTGACAAAAACTcaatttgcagatttttttgtaaagaCTGATAATTATACACCAGGGGCTTCCAACAGAGGGAGGCTATGATCAGTTAATATTGCACAGAAAACCACACCAATTTATAGAACAAAGCCAAACAGACAAAATCCAATCAATGGGTAAAGACTAATTTGGTTTGTAAATGACAATGGCGGAGTTTAGAGCAAAAGTAGTTGCAGTGTGCTCTGATTTTGCAAAAGCAGAAAAACCTGATCATACAGGTTAGAAAGTTTCAACCAAGTGCAACATTTCAGTGGGCTGAGCTTTAATTCCTGTAATGACGGGCAGAGTCTATGGAATAGTGCTGACCACTACCATTAATGTAAGTACTGAGGAACAGCAGAGAATCTCACGTTTTCTCCTCTGAGCAATATTGGAAGCAAAGCAATGGCATTGACAGATACATTGAAAAAGCataaacattttgtataaaggttaagaaaataatatttaagatCCAAATATTACAACATAGTTTAATAAAATCCTCATAGCTTAATCtggcacattttgtttattttgtaatagttACGGTTTTATTATGTGCTAAATTGTTACTGCGGGGTAATTTTGTTAGTGAAATGtttacaacttttaaaaaaacatgacttcaAGAAGTTGGTTGACTTTCATATACTGCACTATAAAGCAGGAGTAATGGCAGTGTAATAGTGTGTTAAAGCTATTTTTAAAGGTGCTAAGCTGCAATGTATCGTATTTTTCACAATTGTTTCATATTCCTTTATAATGtgtatgaatattattttttacagttgtTAGAGTAGGATATGGTgtaagtttaataaaaataaatatttgtacattt

Function

symbol description
cpa6 Enables carboxypeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in several structures, including head; pectoral fin; pectoral fin bud; segmental plate; and tail bud. Human ortholog(s) of this gene implicated in familial febrile seizures 11 and familial temporal lobe epilepsy 5. Orthologous to human CPA6 (carboxypeptidase A6).

NR:

description
PREDICTED: carboxypeptidase A6 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019419 False 669 mRNA 0.46 6 19444469 19454969
TU42573 True 2750 TUCP 0.36 5 19442395 19448573

Neighbor

gene id symbol gene type direction distance location
AMCG00019420 arfgef1,LOC107584936,LOC107727224,LOC107595140,LOC107758297 coding downstream 42340 19367972 ~ 19400055 (-)
AMCG00019421 cops5,csn5 coding downstream 102713 19332001 ~ 19339682 (-)
AMCG00019418 NA coding downstream 118922 19317703 ~ 19323473 (-)
AMCG00019416 tcf24 coding downstream 134422 19306435 ~ 19307973 (-)
AMCG00019410 vcpip1,LOC106599449 coding downstream 188982 19236197 ~ 19253413 (-)
AMCG00019429 slco5a1,LOC102798443 coding upstream 426760 19881729 ~ 19895839 (-)
AMCG00019430 slco5a1,LOC107695420,LOC107758302,LOC107741005 coding upstream 459050 19914019 ~ 19918646 (-)
AMCG00019431 prdm14 coding upstream 507053 19962022 ~ 19969808 (-)
AMCG00019432 NA coding upstream 518331 19973300 ~ 20015967 (-)
AMCG00019437 tram1,LOC107657822 coding upstream 616810 20071779 ~ 20096454 (-)
G33830 NA non-coding downstream 827141 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 1225653 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 1244238 18179089 ~ 18198157 (-)
G33686 NA non-coding downstream 1669070 17743162 ~ 17773325 (-)
G33665 NA non-coding downstream 1818169 17623960 ~ 17624226 (-)
G34006 NA non-coding upstream 12107 19467076 ~ 19480968 (-)
G34148 NA non-coding upstream 1023288 20478257 ~ 20549700 (-)
G34277 NA non-coding upstream 1982946 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 2091239 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 3663832 23118801 ~ 23120960 (-)
AMCG00019417 NA other downstream 140848 19294812 ~ 19301547 (-)
AMCG00019396 NA other downstream 1000414 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 3720943 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 4450399 14951842 ~ 14991996 (-)
G33163 NA other downstream 4884105 14491891 ~ 14558290 (-)
AMCG00019446 ube2w other upstream 1288561 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 3215678 22670647 ~ 22744182 (-)
G34470 NA other upstream 3692892 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 4597042 24052011 ~ 24094664 (-)
G35067 NA other upstream 10063027 29517996 ~ 29521984 (-)

Expression


Co-expression Network