AMCG00019425


Basic Information

Item Value
gene id AMCG00019425
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19847157 ~ 19877863 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019425
CCTCCTTTAGACTACCAAGCAGAAAGTCCACTTCGCAAATCCCAAGTGATTGCCTGGATTCACCGCACCTGCTGCAATGAAGTTCGTCTGGTTTGCTTCGATTCTGGTTCTGTTCATCACTGAACCCCTGAACTGCAATGGCTTTACAACAAGATCCCAGGGTCAGAGAGGACGAGTACAGCGAGACAGAAGAAATATTAGACCCAACATCATCCTTATCATTACTGATGACCAGGATGTTGAGCTAGgCTCTTTGCAAGTGATGAATAAAACCCGGAAGATTATGGAGGAGGGAGGGGCCTCCTTCACCAATGCCTTTGTCACCACTCCCATGTGCTGCCCGTCACGGTCCTCCATGCTAACGGGGAAATACGTTCACAACCACAACACGTACACCAACAATGAGAACTGCTCCTCTCCATCCTGGCAGCTCCAGCACGAGCCCCcttTCTTTGGGAAGTACCTCAATGAGTACAATGGCAGCTACATACCACCTGGGTGGCGAGAGTGGGTTGGGCTGGTCAAAAATTCCCGTTTCTATAATTACACAATGTGTCGGAATGGCTACAAGGAGAAGCATGGTGCCGAATATGCCAAGGATtatttcacagatttaattACCAATGACAGTATCAACTACTTCCGGATGTCCAAGAGGATGTACCCCCACAGGCCAGTGATGATGGTCATCAGCCATGCTGCCCCCCACGGGCCCGAGGACTCAGCCCCTCAGTACTCGGAGTTCTTCCCCAATGCCTCTCAGCACATTACACCCAGTTACAATTATGCTCCCAACATGGACAAGCACTGGATTATGCAATACACTGGTCCAATGAGGCCCATTCACATGGAATTCACAAATTTCCTGCATCGTAAAAGACTTCAGACACTAATGTCAGTGGATGACTCTGTTGAAAAGGTCTATCAAATGCTTGTGGAGACGGGAGAGTTGGACAACACCTATGTCATTTACACCGCAGACCATGGCTACCACATTGGGCAGTTTGGGCTGGTGAAAGGAAAGTCCATGCCTTATGAGTTTGACATCAGAGTTCCATTTTTTGTTCGTGGGCCCAACATCGAGCCAGGATCAACCAATCCTCAGATGGTGCTGAATATCGATCTCGCCCCCACGATATTGGACATTGCAGGACTAGACACACCTCCAGATATGGATGGCAAATCCATTTTAAAACTACTGGAACATGAAAAAACTGGGAACAGATTCAAGCCAAACCGGAAGCCCAAAGTCTGGAGAGATACTTTCCTTGTAGAGAGAGgAAAAATTATCCGCAAGAAAGAGGATGTTGGAGGCAACATCAACATGCAGCAACCTAATGGCCTGCCTAAGTATAAGAAGGTGAAGGAGGTGTGTCAACAATCAGAGTTCCAGACGGCCTGTGAGCAGCCCGGACAGAAATGGCAGTGCATCGAGGATATGACAGGCAAGTGGCGGATTCAGAAGTGCAAAGGGCCGTTGAAGGAGAACGTGAGAAAGAGGGCGAGGAGTCTGCGCTCACGCAGCTACGACAGCAAGGAGAAGCAGTGTGACTGCGGGGAGACCGAGTACAGGGCGGCTAGAGGAGACCGCCGCAGTCAAAGACAGTTTCCAAAGACGAACAAAAGGTACCGGCCTCGATTTGTCCACACGCGTCCCTCGAGGTCCTTGTCTGTCGAATTCGAGGGGCAGATCTACAACATTGACCTGCAGGCAGACGACCAGCAGGCCTATCAACCGAGGAACATCAGCAAACGCCATTACAGCGTGGAGAGGGAGGCGGAGGAGACGGACTTCGAGGAGGACGATGACTCTGAAGAGATGCTGGCAGACGACACCAACACTGTGGGATATCCCAACTCACTCAAGGTCACACACAAGTGCTACATCCTGGTGAATGACACGGttcactgtgagagagagatctaCCAGTCCTCCAGAGCCTGGAACGACCACAAGAGTTACGTCGACCAAGAGATCGAAGCACTGCAGGACAAAATCAAGAATTTGAGAGAAGTGAGAGGACATCTCAAGAGAAGACGGCCAGATTGCGACTGTAGTAAGAAGAgAGAAGCAGCTCAAGAGGTTGACAGTAAAGTGCAAATTTTCAACGATATCcggagaaagaagaaagagaggaagCAAAAGAAGCGTCTGAAGAAGGGGGATGACTGCAGCATGCCaggcctcacctgtttcacgcACAATAACGAGCACTGGCAGACGGCACCCTTCTGGAACCTGGGAGGATTTTGTGCCTGCACCAGTTCCAATAACAACACCTACTGGTGCTTGCGGACGATTAACGAGACGCACAATATTCTCTTCTGTGAGTTTGCCACCGGCTTCTTGGAATATTTTGACATGAACAACGATCCCTACCAGTTGACCAATGCTGTGTACAGTGTGGATAGAGATGTTCTAAACCAACTCCATTCACAACTGATGGAGCTGAGGAGCTGCCAGGGACACAAACAATGCAACCCTCGGCCCAAGGGACAGGAAACAGTGGACAACCACTATGGGACGGACGAAAAGGCTAAGCTGCCCAACTTCACTGTTGACGTCAACTGGCAGGGACTGGAAGATTTGTACTGTGTGAACGACAGCCTGTATGAGTACAGATACAATTATAGTCCAAGCCCGGATGACTGGACAAATTTTCAGAAGGATGTAGATAGTATGTTTGCACTGTTGAGcattttttatgaaaacaatgaaacacaaacGCCTGACACCTTTAACGAGTTCGCCTCTGGGGACGTGCCCCCGGCGGAGTCCGCAGACAACGAATCCAGTGGCGAGATGGCACCTGAGGAGGGGAGACAGCCTGGCGCTGCCACACCAGCCCCCGCCATCACCGCGCCGCTCAGCACAGGCTTCCTTGAATTGCGTAACGACATACCTGAGAAACCCCACCCCGCCTCCGCAACCTGGAGCTTCCTCCCTAAGGAGACGTGGGCCCAGCAGCTGGAAGAGGGACTAGACAGCGATGGGCTCATTTTCAGCGGCAACGGTTTCACCGAGATGGAGACTAGACACGACTCCCTCTTGCGGTCGGCTGCTAGTCTACAGTCGGACCTGGCGTTGCCCAAGGAAGACAACAAGGAGGACATTTTTGAAGCCCAGGGTTACCTTCCAGTAGATCTGGACTATCGCAGCCCAGAGCAGACTGTGAACCTTACAGCTGCTGGTCCCATTCAGCAGGACACTGCAAAGAGCAGGAGAACAGACAGCTGGTTAGAGACGCACAGCTCTGGCACGGGGGATTCAGAAGGCAGCGGCTCCACCTCCTCTCCCTTCAACTGAATTTGAACTGAAAGTAGTTTTGTTGGACACTGTGAAGccaggagagagacaggaaataaaaataaaaaaccgcAGCAGATGTGATACTATTCAATGCAGAAGCAGGTCTTGTGATCTTGTAATATGATTTAGATGTTGTGATGTcatgatgttattatttttttacaggtgCTTTCAGTAATTAGAAATCAGTGTTATGTGTTTATAGGAAAGAAGAAAAGTACGCACACCAGCAACTGTACTGAAATattgcagtttcattttaatggaaagTGAACGATTGCttcaaagtatgtttttttttttcttcttaatatatattttttatgaaaggtCAAGTAAATGGTGAAACCATTGCAGCGCAGTCTTCCACCGTAACAACCACTGACCGTCTTGATCCcagcagtttgttttaaactctAATGCACTTTTAACGTTGGCCTTTTTTCACTGTTACGACTGCTGCCTTACTCTCAGAATAGTGTTCgccttttggttttctttgttcattttgttctaCACTTCCAAAGCTTGTAGTTAAAACTTGTGGATAACAAACACTAATTTGGTATCCACTAGATTTGAATAAAATTTGGTTAGAAAAATGGCTGATATTTATGACTGTTTTACACccaataatcaaataaaactttCCTGTAAACACcccaatacatatttaaaaattatatgtaCATGTACACTGTGAACAGGATTTATTATTACCACTCTAATGCACAGTGCAATACATTGGGGGTGGCACTTTATTTAACACAATGATAATTACCATATGATGTTACAGTTTAGGTTCCTTGGACACGcgtgtatttcaggttaatcGGTTTCCTTGGTGTGTAGTTGATTCAGATCACAGTGGATGAGAACTGTTGATTGCATTTGATTGAAGATTGTCACAATAACACTGCTCTTTGTTTATAATGCCGTTTCTGTATTccattttgtctgtgtgtttttctgtaaataacATCTTCAGTGTAAGCTGTATTTTGAATGAGGCACATATACCGATTGCAAAGACAATTGTAATAGTTCAAAGTTTTTCTACTCTTCTATTATGATctctaaaatgtacatttgaaagGGGCTATGAATTCAGACCTTTTGTATCCATTCATTAGGCCAAGGAACAAGtatagaaatgaaaaatgttcaaaatgaatTGGAGGTAAAAGAAATGGAACACCCTctaaattgattaatataaaattCACTGGGTGACCATATGCAATGGGGTTCCTCATTCAAAGGAAGTGAAGCCAGGAAAGTGATTTGAAGCGCAAAGCTCAAGAGATCACCTGACTTTGCTTCTCAAGGTTGGACACAGCCTTGCCAgtaagtttttttgtttttgttttttaagcagaAAAGGATTTTAATCTGGAGTCCAGTTTAGGATAAATGTAGGGAACTAAATGGAAACATGGTGACCTATATTATAAGataattacacatttgaaaCAAACCACCATTTTATGTCTTTAACTGTTTTACTTTTGAGTTGGGAGAGCACTGGACTAAATGAGTAATCACCTGGCGCCAGAATCGCACAATTAAAGCTTTATATGACCTTCACACCTACACAAAGCAGCTGTGTATGATCGTAGCCCCccacatacaattaaaatccaTAACCTTCTGCATAATCACAGTATTATGTATATTGGACTCTATGTAACAATGTTTAAGCACACACCAGACTATTAAGTATGGAGGACTTGGGCAGTTAAAATTCACAGCCTTGATGGAAATGTAGTATAATGGAAACAAACAGCAATTACAAAGTTTAGCAGACATGAATATTGGACAGTACTGTGGGGGAACATAGACACTTCTGTGGTTTCTGGGGGGCTCTTCTGAATGTGTCAGGCTGTGGTTGTAGGATCAGGCCGTGATCTCCCGTCAGCTTCATAAACaaggtgttgtgttttttaattttctctttaaagAGGTCACTGCCTGCAATTCTAATAACTGACATATTTatggttttatatatgtaaacaaaacaataataaggacagacagagacaaaaCAAGATGCAAAATGATCTGGTGAGTCTGCCATGGCAGTTTCCTGGGCCGTCTTTGATGAGGCTTTCCAGTACAGGAGTGAGAGTTCAGACGATATTGAGCCGATGAGCGCCGGCCAGAGGAGAGGGTCACAGgttattctttaaaatagtGTCATTGATGCACAATGACTTAACACAGGTTTATTGCcg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0012505 endomembrane system cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K14607 SULF; extracellular sulfatase Sulf

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019425 True 5547 mRNA 0.45 17 19847157 19877863

Neighbor

gene id symbol gene type direction distance location
AMCG00019426 NA coding upstream 110287 19726585 ~ 19736870 (+)
AMCG00019422 zgc:162928,c23h8orf34,LOC105890107,LOC107686688,LOC107758299,LOC107585009,LOC107695418 coding upstream 158543 19680768 ~ 19688614 (+)
AMCG00019424 cunh8orf34,zgc:162928,LOC105890107,LOC107741009,LOC107686688,LOC107566197,LOC107758299 coding upstream 182021 19662374 ~ 19665136 (+)
AMCG00019423 prex2,LOC107566194,LOC107741010,LOC107686687,LOC107758281 coding upstream 221353 19614916 ~ 19625804 (+)
AMCG00019427 prex2,LOC107686687 coding upstream 245517 19536834 ~ 19601640 (+)
AMCG00019433 NA coding downstream 237461 20115324 ~ 20122534 (+)
AMCG00019445 kcnb2,LOC108426548,LOC107657825,LOC107560266 coding downstream 585460 20463323 ~ 20463886 (+)
AMCG00019444 NA coding downstream 665724 20543587 ~ 20545758 (+)
AMCG00019440 NA coding downstream 677844 20555707 ~ 20565280 (+)
AMCG00019441 rdh10,rdh10a coding downstream 734483 20612346 ~ 20626037 (+)
G33913 NA non-coding upstream 637447 19207194 ~ 19209710 (+)
G33874 NA non-coding upstream 919870 18927047 ~ 18927287 (+)
G33812 NA non-coding upstream 1263453 18576495 ~ 18583704 (+)
G33810 NA non-coding upstream 1395754 18451133 ~ 18451403 (+)
G33809 NA non-coding upstream 1396316 18450617 ~ 18450841 (+)
G34084 NA non-coding downstream 193473 20071336 ~ 20071564 (+)
G34086 NA non-coding downstream 197315 20075178 ~ 20078454 (+)
G34093 NA non-coding downstream 217455 20095318 ~ 20096450 (+)
G34183 NA non-coding downstream 755214 20633077 ~ 20635272 (+)
G34192 NA non-coding downstream 795124 20672987 ~ 20746971 (+)
AMCG00019428 LOC107595150 other upstream 392020 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 552949 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 825745 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 2394498 17449320 ~ 17452659 (+)
G33406 NA other upstream 3765214 16043942 ~ 16081943 (+)
G34170 rpl7 other downstream 729611 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 2737760 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 3307953 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 3355407 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 3794262 23672125 ~ 23695801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G104968 NA unknown CI01000018 null 3482104 ~ 3500514 (-)