AMCG00019428 (LOC107595150)


Basic Information

Item Value
gene id AMCG00019428
gene name LOC107595150
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19451247 ~ 19455137 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019428
ATGCAGCTTCTCAGAGTACAATCTGTAGTTCTGGCTGGGGAAACAAAGTCAAACACGGCAGACATCTACTGTGCATCCCTAACCTTGATCCACACTGTGTCCCCAGCCTCACTGACAGTGGACCTCTGGCAGCCCAACAGCCCGTCTTTCATCAGAGAGGACAGTGCTGTGGATATCCACTTAGAGAGAAACCGATCCCACACCTTCAGGACCCGCCTACGGCAAGCCAACATTCACTACAAGGTTCTTATCTCGAACCTCCAGAAGGAAATTGAAAAGCAGACGGGGTATCGGTCTTCCAGAAAGCGCAGATCAGAATCGGAGTACGATTATGAGGTGTATCACTCTTTAGAAGAGATTCAGCGCTGGATGCATGACATGAACAGAACACACTCACACCTGATTGACTTGTTCTCCATCGGCCAGTCTTTCGAAGGAAGGCCTCTTTATGTGATTCAGGTAGGGGCAAAAGATGTGAATCATTAG
>TU42574
AAGTGCAGGAATCTGTCATTGAGAGGTGAAATGCGTGAATTACAGGCTGGTTCCTGCACTACAGGTGGACCTCTGGCAGCCCAACAGCCCGTCTTTCATCAGAGAGGACAGTGCTGTGGATATCCACTTAGAGAGAAACCGATCCCACACCTTCAGGACCCGCCTACGGCAAGCCAACATTCACTACAAGGTTCTTATCTCGAACCTCCAGAAGGAAATTGAAAAGCAGACGGGGTATCGGTCTTCCAGAAAGCGCAGATCAGAATCGGAGTACGATTATGAGGTGTATCACTCTTTAGAAGAGATTCAGCGCTGGATGCATGACATGAACAGAACACACTCACACCTGATTGACTTGTTCTCCATCGGCCAGTCTTTCGAAGGAAGGCCTCTTTATGTGATTCAGCTAGGAAAGAGAAGCCGCCGCTATAAGAAAGCTGTCTGGATTGACTGTGGGGTCCATGCCAGGGAATGGATCGGCCCAGCTTTTTGTCAGTGGTTTGTGAAAGAAG

Function

NR:

description
PREDICTED: carboxypeptidase A6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019428 False 486 mRNA 0.49 4 19451247 19454972
TU42574 True 512 lncRNA 0.49 4 19451576 19455137

Neighbor

gene id symbol gene type direction distance location
AMCG00019414 NA coding upstream 84719 19340246 ~ 19366528 (+)
AMCG00019413 sgk3,LOC107666631,LOC106579527 coding upstream 167515 19269809 ~ 19283732 (+)
AMCG00019407 adhfe1,LOC101480322 coding upstream 249569 19191577 ~ 19201678 (+)
AMCG00019411 rrs1,LOC106579528,LOC107590198 coding upstream 260934 19189279 ~ 19190313 (+)
AMCG00019406 trim55b,LOC107586797,LOC107705202,LOC107663638,LOC107656154,LOC107590338,LOC107721936 coding upstream 331738 19096736 ~ 19119509 (+)
AMCG00019427 prex2,LOC107686687 coding downstream 81697 19536834 ~ 19601640 (+)
AMCG00019423 prex2,LOC107566194,LOC107741010,LOC107686687,LOC107758281 coding downstream 159779 19614916 ~ 19625804 (+)
AMCG00019424 cunh8orf34,zgc:162928,LOC105890107,LOC107741009,LOC107686688,LOC107566197,LOC107758299 coding downstream 207237 19662374 ~ 19665136 (+)
AMCG00019422 zgc:162928,c23h8orf34,LOC105890107,LOC107686688,LOC107758299,LOC107585009,LOC107695418 coding downstream 225631 19680768 ~ 19688614 (+)
AMCG00019426 NA coding downstream 271448 19726585 ~ 19736870 (+)
G33913 NA non-coding upstream 241537 19207194 ~ 19209710 (+)
G33874 NA non-coding upstream 523960 18927047 ~ 18927287 (+)
G33812 NA non-coding upstream 867543 18576495 ~ 18583704 (+)
G33810 NA non-coding upstream 999844 18451133 ~ 18451403 (+)
G33809 NA non-coding upstream 1000406 18450617 ~ 18450841 (+)
G34084 NA non-coding downstream 616199 20071336 ~ 20071564 (+)
G34086 NA non-coding downstream 620041 20075178 ~ 20078454 (+)
G34093 NA non-coding downstream 640181 20095318 ~ 20096450 (+)
G34183 NA non-coding downstream 1177940 20633077 ~ 20635272 (+)
G34192 NA non-coding downstream 1217850 20672987 ~ 20746971 (+)
AMCG00019415 NA other upstream 157039 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 429835 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 1998588 17449320 ~ 17452659 (+)
G33406 NA other upstream 3369304 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 3824292 15554819 ~ 15626955 (+)
G34170 rpl7 other downstream 1152337 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 3160486 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 3730679 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 3778133 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 4216988 23672125 ~ 23695801 (+)

Expression


Co-expression Network