AMCG00019431 (prdm14)


Basic Information

Item Value
gene id AMCG00019431
gene name prdm14
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19962022 ~ 19969808 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019431
aacattaaaaaaaaaaaagtaatgatctcttattaaacattttaaatacaaatgaattcGTTGCAAATATAACTCAACTATGCATTTGTTGAATCAAACCAGACGTCTGATAATGCtcttatatataaaacattgatttgaGTTTTGGGCGTAGTTTATTCATGCCAGACAGTTTTTCTTTAGAAGAAGtacattgtaattgtttatgtatatctttattttgaactaattttaatagttacatttatattaaagagAAGATGCATGTTTAAGTTTCTGACAGTCCAACAATTAATCTGTTAAAGACAATAAAAGTGTCTCCACGATATGCAGAAAGTAATTTCCTACACACAATCCAGGATTAGCTGCGAGGTGATGTGAAGTTGTGCAGCTCCGGAGTGTTGTCTGTTGAGTGATGTCCTGTAAATATAAAAGCGTGGGATCAGTGGAAAGCAggttagtaataataatgtgttaaagtGCCATCCCCAGGGGCGCAGATAGATAATCTGGATGAGCTGATTTCTGACCAATGGCTGTCAGGAGGGGGACAGGCATCTCCTCCGGTCCTGTCTCTGTCCAGTCCACTCTTCACACCAGCTGCCCTCAGTCGTGCATGGGGCAGGATGAGCACTGCAACTCGCTGTCTGTCCTCAACCTGGGAACCCGAGTAGATGCGCTGGGTTAAACAAAGCTATTGAAGAAGCGTGTGTGAAAGTATTCATTCCTATGATGTCTTTGGAGTTAACAGACCTGAACATTTAAAACGAGAAAAGCATCCGATCTAGAACAATAAGaTCAAAggctggaacagaattcctttCCCAGACTCTGAAATCTTTGATCTCCTACTGGGATGTCGTTGTCATTGTCAAGCAATCCTGCATTGAAGGACAAGAGTTACCATTTAGAAACTCTCACAACCAGTCCGGATAAACTACCACATTATTACCCGGCTGTGCTGCCCGGCTCGCAATATATGGATGTCTTCAGAAGCGCCCAGAGCATCTTCCACCCGCTCAAGTCTCTGGGACGCCTTGTCACGGACACGCAAACAGTGATGCCATTTAACTTCAGTGGACTCCCATCCTTTCTCAACCCTCACCACCAGTCAACCGCCCTGCATGGACAACTCTTCAACGTGTTACCGTCACACAAGCACCCAGCCAGCATCCCCAACCCTCTCTACTCCAGACATGAAGATGCAGGTGCCAGGGTTACTGGTCAACCTGCGCGACCTAGATCAGGGTTCAATAGTCCTCAAAGCGAGACAACTCTTTCAACGTGTTCTCCGGCAAAAGAAAGTGTCTTCAGTGCGCACAGTGGCGGCCCGATGGCGGAGAGAGCCCGCACTTTCAACTTCACCGAGGAGGACCTGTACACGGTGCTATACGGATATTCAAAGGAGAACAGAGACCAGAGCATTGGCCACGCTATATCTGGACTGGTATTCCCTGAACATGCAGTTCCTGAATCTCAATTCCAACTACTGGATTGCGATTCCCTTGACCTGCCAGAAGGATTGTCTATTCTGCAAACAAAATACGGATGTTTTCCTCACTACGGCATTTACTGCAAAAGCATCATTCCGAAGGGGTGCAGGTTTGGACCCTTTCAGGGAAAGGTGGTCAACACCAGTGAAATCAAAACCTACGATGACAACACGCTTATGTGGGAAATTTTCGACAATGGCCGGCTGAGCCATTTCGTGGACGGCAGGGGCTCGTCGGGTAATTGGATGTCTCTGGTGAAGTGTGCCCGGTTTCCAGAGGAGCAAAACCTCACCGCTGTCCAGAGCCAGGGCCAGATCTTTTACGAGGCCTGTAAAGAAATTCGGCCCAAACAAGAGCTGTTGGTGTGGTATGGAGATTGTTACTCGCAGTTTCTGGGAATCCCGCTGACCCTGAAAGAGCTTGCAGACGAAAAGGACCTCCAACAGCAGAATGAGGAATCTGGGGACGGATTCAAGTGTGACCGATGTGGGAAAGTGTTTGCGTACAAATACTACAGAGACAAACATCTGAAGTACACGCGTTGTGTGGACCAGGGGGACAGGAAATTCCCGTGTCACCTCTGCAACAGATCATTTGAGAAGCGGGATCGACTCCGCATCCACATTTTACACGTACACGAGAAGCACAGACCCCACAAAGCTTTCACCGCTTCCAGCATCCTGCGGACTCACATTAGGCAGCACTCGGGCGAGAAACCCTTCAAATGCAAGCACTGTGGAAAGGCTTTCGCATCCCACGCAGCTCATGACAGCCATGTGAGACGAACCCACGCCAAGGATAAACCACATACCTGCGATGTGTGTGGGAATACATTTCAAGAGCTGGAAGAACTGAAATATCACATGAAGAACCACGAAGATAGACCACTGTTAGAAACTACCATTGCAGCAGACGTCAAAAACTCCTGCATTCCTACAAATGTGCCCACAGAAGGGGATTTGTACACCAAAACCAAGGACTGTTCCAGTGGGAAAAGGATTCATGGAGAGAGCTACTCATTCATGACAAACACTAGCATCACAGTCCTCAATCCAGAGGGTTATAGGCCCTggaattaaaaagagaaaaaataaattaagattaaaGATGCTGctatcagtttttgttttacagatgaaattgctttctgcttttaattattgtaaaaaaaatgtataatttttaattttacaattgttctttgacattttaaatttttgtGTGATGGCAAGGTCTATGATGAATTTAAGtttcaaaagtatttaattttatttgttttatattcttcCAGAAATAGTCTATATTGTCTGAGTCATTTACATACGTTGACTTCAAGCTACAATTCTGTTCTTTGCACATGCACAAACACTTTTTAATGGCTActtttataatatgcaaatttGTTTGCACAAGGACGTTTTAACTGAGATTATATTGCACATTAACAAATAACCCGATAGAATGtggttatttctttaaaaatgttttacttctgTTCTGCATAAAATACTGGCATTCAGAAAAGGCATTTGAACTTTTGAACTTACCTTGCCAATCTTCAATGTGCTTCATGATAGattttatagaataaaatgATAGATGGCCTCAGGACACTATGCAATTATTTACTACCTCTAAGATATATCCCCTGTACTGACTGTTAGATCATTGTGTCCTTCTGTGTTACTGTAAATGCAAAGCTGTTTGTTAGAAGCTACCAGTTATgtgaaatactgtttatattgaAAGATGTGCacattcaatttataaataaagaatcaTTGGGCATGGAAATAAAATTAGTATTGCTTCCATTATTCAGAGGGATTCGATTTGCATAGGAatgtttaagttattttatttatgtctggAAAGTTTAAGCCTTTTATCTTGTAAATGTGAACAGTTTGTAATTTGTCTGCAGCCATGGAGCTTTATGTAACTATACAATTCCAACTaataaatgcatcattaaaTGTTGCTACAA

Function

symbol description
prdm14 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within axonogenesis; regulation of DNA methylation; and stem cell population maintenance. Located in nucleus. Is expressed in several structures, including nervous system; neuroblasts; presumptive neural plate; spinal cord neural keel; and spinal cord neural tube. Orthologous to human PRDM14 (PR/SET domain 14).

NR:

description
PR domain containing 14, partial

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K24646 PRDM14; PR domain zinc finger protein 14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019431 True 3480 mRNA 0.42 8 19962022 19969808

Neighbor

gene id symbol gene type direction distance location
AMCG00019430 slco5a1,LOC107695420,LOC107758302,LOC107741005 coding downstream 43376 19914019 ~ 19918646 (-)
AMCG00019429 slco5a1,LOC102798443 coding downstream 66183 19881729 ~ 19895839 (-)
AMCG00019420 arfgef1,LOC107584936,LOC107727224,LOC107595140,LOC107758297 coding downstream 561967 19367972 ~ 19400055 (-)
AMCG00019421 cops5,csn5 coding downstream 622340 19332001 ~ 19339682 (-)
AMCG00019418 NA coding downstream 638549 19317703 ~ 19323473 (-)
AMCG00019432 NA coding upstream 3492 19973300 ~ 20015967 (-)
AMCG00019437 tram1,LOC107657822 coding upstream 101971 20071779 ~ 20096454 (-)
AMCG00019438 NA coding upstream 127578 20097386 ~ 20193004 (-)
AMCG00019435 eya1,LOC107758809,LOC107657823 coding upstream 223443 20193251 ~ 20197134 (-)
AMCG00019436 eya1 coding upstream 238009 20207817 ~ 20278351 (-)
G34006 NA non-coding downstream 481054 19467076 ~ 19480968 (-)
G33830 NA non-coding downstream 1346768 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 1745280 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 1763865 18179089 ~ 18198157 (-)
G33686 NA non-coding downstream 2188697 17743162 ~ 17773325 (-)
G34148 NA non-coding upstream 508449 20478257 ~ 20549700 (-)
G34277 NA non-coding upstream 1468107 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 1576400 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 3148993 23118801 ~ 23120960 (-)
G34476 NA non-coding upstream 3240433 23210241 ~ 23286999 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 507053 19442395 ~ 19454969 (-)
AMCG00019417 NA other downstream 660475 19294812 ~ 19301547 (-)
AMCG00019396 NA other downstream 1520041 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 4240570 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 4970026 14951842 ~ 14991996 (-)
AMCG00019446 ube2w other upstream 773722 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 2700839 22670647 ~ 22744182 (-)
G34470 NA other upstream 3178053 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 4082203 24052011 ~ 24094664 (-)
G35067 NA other upstream 9548188 29517996 ~ 29521984 (-)

Expression


Co-expression Network