AMCG00019435 (eya1,LOC107758809,LOC107657823)


Basic Information

Item Value
gene id AMCG00019435
gene name eya1,LOC107758809,LOC107657823
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20193251 ~ 20197134 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019435
GAATGTGATCAGGTACATATCGATGATGTCTCTTCAGATGACAACGGCCAGGACTTAAGCACATACAACTTCGCCACAGACGGCTTCCATGCAGCAGCAACCAGTGCAAATCTGTGTCTGGCTACCGGTGTGCGAGGAGGAGTGGACTGGATGCGAAAACTCGCCTTCCGTTACAGACGAGTAAAAGAAATTTACACcacttacaaaaataatgttggAGGTCTTCTTGGTCCGGCCAAGAGGGAAGCCTGGTTGCAATTGCGTGCAGAAATTGAAGCCTTGACAGACTCCTGGTTAACACTGGCACTCAAAGCACTCACATTAATTCACTCGAGGTCAAACTGTGTGAATATTTTAGTTACGACAACGCAGCTCATACCTGCCCTTGCGAAAGTCTTGCTCTATGGACTAGGCATAGTATTtccaattgaaaatatttataGGAAGGAAAGTTGTTTCGAAAGAATAATCCAGAGGTTTGGGAGAAAAGTCGTCTATGTTGTTGTAGGAGATGGAGTGGAAGAGGAGCAGGGCTCTAAAAAGCACAACATGCCCTTCTGGAGGATCTCTAGTCACTCTGACCTTATGGCCCTCCATCACGCCTTGGAACTGGAATACTTGTAG

Function

symbol description
eya1 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within adenohypophysis development; otic vesicle morphogenesis; and otolith development. Predicted to be active in nucleus. Is expressed in several structures, including adenohypophyseal placode; brain; ectoderm; head; and lateral line system. Human ortholog(s) of this gene implicated in branchiootorenal syndrome and branchiootorenal syndrome 1. Orthologous to human EYA1 (EYA transcriptional coactivator and phosphatase 1).

NR:

description
PREDICTED: eyes absent homolog 1 isoform X5

GO:

id name namespace
GO:0071600 otic vesicle morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0021984 adenohypophysis development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019435 True 624 mRNA 0.46 6 20193251 20197134

Neighbor

gene id symbol gene type direction distance location
AMCG00019438 NA coding downstream 247 20097386 ~ 20193004 (-)
AMCG00019437 tram1,LOC107657822 coding downstream 96797 20071779 ~ 20096454 (-)
AMCG00019432 NA coding downstream 177284 19973300 ~ 20015967 (-)
AMCG00019431 prdm14 coding downstream 223443 19962022 ~ 19969808 (-)
AMCG00019430 slco5a1,LOC107695420,LOC107758302,LOC107741005 coding downstream 274605 19914019 ~ 19918646 (-)
AMCG00019436 eya1 coding upstream 10683 20207817 ~ 20278351 (-)
AMCG00019434 NA coding upstream 155020 20352154 ~ 20353094 (-)
AMCG00019439 NA coding upstream 180684 20377818 ~ 20407592 (-)
AMCG00019442 NA coding upstream 366912 20564046 ~ 20574616 (-)
AMCG00019443 NA coding upstream 397636 20594770 ~ 20599493 (-)
G34006 NA non-coding downstream 712283 19467076 ~ 19480968 (-)
G33830 NA non-coding downstream 1577997 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 1976509 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 1995094 18179089 ~ 18198157 (-)
G33686 NA non-coding downstream 2419926 17743162 ~ 17773325 (-)
G34148 NA non-coding upstream 281123 20478257 ~ 20549700 (-)
G34277 NA non-coding upstream 1240781 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 1349074 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 2921667 23118801 ~ 23120960 (-)
G34476 NA non-coding upstream 3013107 23210241 ~ 23286999 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 738282 19442395 ~ 19454969 (-)
AMCG00019417 NA other downstream 891704 19294812 ~ 19301547 (-)
AMCG00019396 NA other downstream 1751270 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 4471799 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 5201255 14951842 ~ 14991996 (-)
AMCG00019446 ube2w other upstream 546396 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 2473513 22670647 ~ 22744182 (-)
G34470 NA other upstream 2950727 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 3854877 24052011 ~ 24094664 (-)
G35067 NA other upstream 9320862 29517996 ~ 29521984 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_00653069_00678015 EYA1 coding CI01000018 null 653069 ~ 678015 (+)