AMCG00019436 (eya1)


Basic Information

Item Value
gene id AMCG00019436
gene name eya1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20207817 ~ 20278351 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019436
attcttGTGTATCTTCAAGCATTCCTGCTGTGCGGTGTTGACCAGCAGTCTGGACACATCATTGGGCTGACCTACTCCCAACTGGAGAAGCAGCTGTGGCGTTGGGAATGTGAAATCTCTGGATGTGGAGAACTTGCATatcaAAATaGCATGGCTCTGCGGTCTATGGAAATGCAGGATCTAGCCAGTCCACACAGTCGAGTAAGTGGAAGCAGTGAATCTCCTAATGGTCCAAAACTTGACAACTCACATATCAATAACAATTCCATGACACCAAATGGCACAGAAGGTGATAACATCACTATGCTTACCACTGCTGACTGGTTGTTAAGTTCTAGTACACAGAACACTGCAGTTAAAACAGAGCCAATGAGCAGCAGCGAAATTGCCACATCTGCAGCAGACGGGTCTTTAGACAATTTCTCAGGATCAGCTATTGGAACCAGTGGCTTCAGCCCAAGACAAACTCACCAGTTCTCTCCACAGATTTATCCTTCCAACAGACCATATCCACATATTCTTCCTACCCCTTCATCACAAACTATGGCTGCATATGGGCAGACGCAATACACCACAGGAATGCAACAAGCCGCAGCTTATGCTACCTATCCTCAGCCAGGGCAACCCTATGGAATTCCAGCTTATGGCATCAAGACAGAAGGTGGACTGACCCAAACACAGTCTCCTGGACAGACAGGATTTCTAAGCTATGGATCCAGCTTCACGACACCCCAAACAGGACAAGCTCCCTACAGCTACCAGATGCAAGGTCAGTATCACTTCTCTCTGTTGCAAGTGGACTATCCTTCTTACCCAGCTTTCGGCCAAGGTCAATATACACAGTATTACAACACCCCACCGTACACTTCCCCATATATGACAAGTAATAACACCAGCCCTACGACCCCATCTACCACGGCAACATACCAGCTGCAGGAGCCCCCGTCTCTCATTACAAGCCAAGCAGTTACAGACCCCACTACAGGGGACTACAGTACAATCCACAGTCCATCAACTCCCATTAAAGATTCAGATTCGGATCGATTGCGCCGAGCTTCAGATGGAAAATCACGTGGCCGGGGCAGAAGGAACAATAACCCATCACCGCCTCCAGACTCTGACCTTGAGCGCGTTTTCATATGGGATTTGGATGAAACAATCATCGTTTTCCATTCCTTGCTTACTGGGTCTTATGCTAACAGATATGGCAGGGATCCTCCAACTTCTGTGTCACTAGGACTTCGGATGGAAGAAATGATCTTCAACTTGGCAGATACGCATCTTTTCTTCAATGATTTAGAa

Function

symbol description
eya1 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within adenohypophysis development; otic vesicle morphogenesis; and otolith development. Predicted to be active in nucleus. Is expressed in several structures, including adenohypophyseal placode; brain; ectoderm; head; and lateral line system. Human ortholog(s) of this gene implicated in branchiootorenal syndrome and branchiootorenal syndrome 1. Orthologous to human EYA1 (EYA transcriptional coactivator and phosphatase 1).

NR:

description
PREDICTED: eyes absent homolog 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019436 True 1302 mRNA 0.47 14 20207817 20278351

Neighbor

gene id symbol gene type direction distance location
AMCG00019435 eya1,LOC107758809,LOC107657823 coding downstream 10683 20193251 ~ 20197134 (-)
AMCG00019438 NA coding downstream 14813 20097386 ~ 20193004 (-)
AMCG00019437 tram1,LOC107657822 coding downstream 111363 20071779 ~ 20096454 (-)
AMCG00019432 NA coding downstream 191850 19973300 ~ 20015967 (-)
AMCG00019431 prdm14 coding downstream 238009 19962022 ~ 19969808 (-)
AMCG00019434 NA coding upstream 73803 20352154 ~ 20353094 (-)
AMCG00019439 NA coding upstream 99467 20377818 ~ 20407592 (-)
AMCG00019442 NA coding upstream 285695 20564046 ~ 20574616 (-)
AMCG00019443 NA coding upstream 316419 20594770 ~ 20599493 (-)
AMCG00019449 stau2,LOC107754214,LOC107560262,LOC107691439 coding upstream 404911 20683262 ~ 20703828 (-)
G34006 NA non-coding downstream 726849 19467076 ~ 19480968 (-)
G33830 NA non-coding downstream 1592563 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 1991075 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 2009660 18179089 ~ 18198157 (-)
G33686 NA non-coding downstream 2434492 17743162 ~ 17773325 (-)
G34148 NA non-coding upstream 199906 20478257 ~ 20549700 (-)
G34277 NA non-coding upstream 1159564 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 1267857 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 2840450 23118801 ~ 23120960 (-)
G34476 NA non-coding upstream 2931890 23210241 ~ 23286999 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 752848 19442395 ~ 19454969 (-)
AMCG00019417 NA other downstream 906270 19294812 ~ 19301547 (-)
AMCG00019396 NA other downstream 1765836 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 4486365 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 5215821 14951842 ~ 14991996 (-)
AMCG00019446 ube2w other upstream 465179 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 2392296 22670647 ~ 22744182 (-)
G34470 NA other upstream 2869510 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 3773660 24052011 ~ 24094664 (-)
G35067 NA other upstream 9239645 29517996 ~ 29521984 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_00641198_00648887 EYA1 coding CI01000018 null 641198 ~ 649104 (+)