AMCG00019440


Basic Information

Item Value
gene id AMCG00019440
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20555707 ~ 20565280 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019440
TTTGAAACAGGAAAGCCAAGATGGAGAGCAGTTGCAACAAGTCTGTGCCTTTTCCACAAGTTGAACATGTTGCACAAAATTGGATGATTGATTTCTTATTTCGCTCGTTATGCCATTACTTCAAACACGACCAGTACAAAAAGTTCAACCAGACGCTGGATGTTTTAGAAGCCATGATGGAGGGATCCTGTGAGCTCAAGCAGGACCAGAAGAAGAAGATTCACATATGCTTTTTACTCTCACGGATAGTGAATGGGAAAAATCTAGATGTCCAATATGAAGAAGATGAACATGTTACACCATTATTATCTGCACTGTCAGTTTGGAACATaataaaagaggaaataaagGACGACAAAGAGCCTCTGTATGAAGAAATACAGAAGTTACTGTTTTCAGTAGGAGTTTGCTTGGAAAAGGGGCAACATCAAAAGGCATCACATGTTCTCAGCTGGCTGACAGAAAAGAGTAAAATACCACagaacttaaaaatgaaactttcCCTAATTTTGAACAAGAGGGAAACGTATCATCAGTTTCTCCTGAAATTCAGCTTTGACTGCTTGTTAGAAAAAATCAAGACGTTCCTGGATTCCTTTCTTAAAGACTATCCATCAGACTTTCTGCTAAAGTCAGCTTCAAAAGTGGTAGAGGTCTGCCAAGAAAATGGACtggaagaagagaaaacagaaacaccAGAGTCAGGAACCACAACGGAAGAGGGTGCTGGAATGAAAAGGCCTAAAAGGAAACTCCTTACAGTTCAGAATGTTAACCACTGGAAACCAGAAACGGCAAGAAAACAGAATcGTTGGACTTATGAAGAAGACATGCAGCTGAAGTTAGGAGTGAAGCGATTTGGTGAAGGAAACTGGAGCCTAATACTTAGAAATAGCAAAATTAAAGACCGCACTGGTGTTCAGTTGAAGGACAGGTGGAGGATCctgaagaaagagaaacaaacctGAACGTTTGATTTGATTGACAAGTGATCTAGCTGGGAGAATCTGATTCCAACTAACTTAACAAAAGTGCATTGTAAGCTAGTACAGAATCTCTAATCAAGAAAAAGTAATTGTAAAGTTGAGTGTAATTTAGCTGCcgtgattttttaaaaatattgagagAAGTTTacaagaattttttttttttaattactttaaagttAATTTCAATTTACGATTTTCTTTGACATACACAGAATTGACAGGAAATAAATGGGCGCATTTGGAAAGAAACCAAATTTGTTTCATAAGCATCGCTGGCGAAATGTACAAAGTTAATCGTTTCTAGTTCCACTGTTTTACATCACGCAgggatttgttttaacattgtaaGGACAGTATAGGACCACAAATTAGTCACCCTTCTATTCTGGAAGTGCATTATTTGGTTTAAATAGAGTTTTCCTGTCTATGTAAGTTAAGTCTGTTTATAGCCCCATGTACCAAGATTAAGACCACTCTtgtaattttccttttctttattaatttaaaaaaattgataaGGCAGTTATGTGAAAAGTTTCAGAAATGAGAAGGACCAACCAAAGCAAAGGCCTTCTCATCCAGACATGGGGCAGTCCATGCAAAGAACCCCATTTCAACCTAAACAAGGCGAGTTTACCCAGGGTTTGTCCcctttattataaatatgtgtttagtagccttttgtaaataattgtaaatactaagcatctgtgtttttgttaagaTACCAGTGTTCCTTGTATTTGAAacttgttaaaatatgtataatgctgaaattatgtaaataaaaatgcagtggacaaaaaa

Function

GO: NA

KEGG:

id description
K11110 TERF1, TRF1; telomeric repeat-binding factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019440 True 1796 mRNA 0.36 8 20555707 20565280

Neighbor

gene id symbol gene type direction distance location
AMCG00019444 NA coding upstream 9949 20543587 ~ 20545758 (+)
AMCG00019445 kcnb2,LOC108426548,LOC107657825,LOC107560266 coding upstream 91821 20463323 ~ 20463886 (+)
AMCG00019433 NA coding upstream 433173 20115324 ~ 20122534 (+)
AMCG00019425 NA coding upstream 677844 19847157 ~ 19877863 (+)
AMCG00019426 NA coding upstream 818837 19726585 ~ 19736870 (+)
AMCG00019441 rdh10,rdh10a coding downstream 47066 20612346 ~ 20626037 (+)
AMCG00019450 NA coding downstream 211976 20777256 ~ 20778916 (+)
AMCG00019453 gdap1 coding downstream 309150 20874430 ~ 20878814 (+)
AMCG00019455 LOC107092069 coding downstream 387139 20952419 ~ 20955046 (+)
AMCG00019454 NA coding downstream 412653 20977933 ~ 20989120 (+)
G34093 NA non-coding upstream 459257 20095318 ~ 20096450 (+)
G34086 NA non-coding upstream 477253 20075178 ~ 20078454 (+)
G34084 NA non-coding upstream 484143 20071336 ~ 20071564 (+)
G33913 NA non-coding upstream 1345997 19207194 ~ 19209710 (+)
G33874 NA non-coding upstream 1628420 18927047 ~ 18927287 (+)
G34183 NA non-coding downstream 67797 20633077 ~ 20635272 (+)
G34192 NA non-coding downstream 107707 20672987 ~ 20746971 (+)
G34204 NA non-coding downstream 206246 20771526 ~ 20776616 (+)
G34235 NA non-coding downstream 524864 21090144 ~ 21090416 (+)
G34278 NA non-coding downstream 896402 21461682 ~ 21461891 (+)
AMCG00019428 LOC107595150 other upstream 1100570 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 1261499 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 1534295 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 3103048 17449320 ~ 17452659 (+)
G33406 NA other upstream 4473764 16043942 ~ 16081943 (+)
G34170 rpl7 other downstream 42194 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 2050343 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 2620536 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 2667990 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 3106845 23672125 ~ 23695801 (+)

Expression


Co-expression Network