AMCG00019442


Basic Information

Item Value
gene id AMCG00019442
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20564046 ~ 20574616 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019442
CTGACAGCAAGGCACAACACATCCACACGCACACAGGTTATAGCTTACTTGTGTTAAAACAGCCGTGGTGGGTATTTACTTGAGTAATATGTGTTTCAGGGGATCATTAACAAGCAAAATGATATGACAACTAAAGGGTTGATTTACATACCTTGGGCTCTTTTATCTGGAGTCAAGCCAAATGCTCACATtcctctctgtgctgtgagAGCTTGGTGTAAAAGCGGGCTGGGCACAGTGCTCTGATCTGACTCCAGTGCTGCACAAGGGCAGAAGAGCCAAAAGacgagtgaaaaaaaaaactttaattctTACTCAGCGCATTCTCCACTGCTGAAAAGGGACACTGTGGGTGACTGCTTCCAGAAAAATATGTTAGCTGCAGAGACCAGATACAATTCTCTGCTTTAGTTCACACAGAATGGATCTTTTCTTTGAGGCGAACAATCTGTAAACTTGTTTTATGTGTCTACAGAGGATCAGTGTTAAGAAGAATTTCAGGTCACAAGGATTTTAACAGCAGGGATAACCCCTGTCTACTCTACAAGACTGCTTCCTCAAGACTGACAGAATGGGAATGGTGCACTCAATTACCAAATCTGGATAAATACACCACCGTTTATCTCATTGCAGCTTcatttccacaaaaaaaaaaatatttcagaagagGTGGCCTACAAATCGGATTCCTGGAAAATCCCCTGGGGAGCGACTCAGTTTTGCCCAGTTTTTGGCTCATCATGAGGGGATTACCTGTTCAGGGTGTTTGCTTCTTACAGCTAGCTGTTCTGCTGGGAACATACCAGGTAGCTGAAGGAGGATGCTCCGAGTTGTGCTGTCGAGGCAAGGACCCCACCTGCACAAGCACAGACTGGAGAATGGACAGGGTCTATGGGACGTGCTTTTGTGATGAAAGCTGTCAGCACACCAGAGACTGCTGTTTTGACTACACATCTGTGTGTCCAGCTCAGGCTTGTGTGGTGAGTGAGTGGAGCCACTGGAGTGGATGTGCCCAGCAGTGTGAACCGGCCATCCGAGTGCGAAGGCGGCACATAGAGCAGGAGCCCAGGAACAGCGGGAACGCCTGCCCCTCGCTGGAGGAGAAGGCCGGCTGCCTAGAATATATCAACACCCGAGGGAAATACTGCGCACAGACACATGGTCTTGCCTTCATAACAACAATTAAGTACAGTAAAGATCGGATAAAACGTCATCTGTCTGGAGACTCAGAGGACCAAGGGTATTGTATGGAATTCAAGCTGGAATCCCTCTCTCATCACTGCAATGCAGAGAGCCGCCCCCACGCACAGTGGATGCAGTACCTGAGAGAGGGCTACACGGTCTGTGTCGTGTGTCAACCACCAGCTATGCGTAATGACAGCCACAGCTGCCAAGGAGATGGTGCCGACTTTGATGGAACTAAAGTCCTTCACTGGCAGGCAGTCGGTAATCCCCGATGCAGAGGCACGTGGAAGAAAGTGCAGAAAATGGAACAGTGCTCCTGTCCACTTGTACacagcttcatttttatttgagcGGATCGGAGAGGCACGCCTAGACACATTCCTTCCTGTTAAACGCAATGGCTCAATTGAACACGAGAGTACGACATGCAGAGGTGACATACTAAACtttgtaaaaagtaaattattccTAGATTGCATGACTTCAACTTCTTTGATACAGGGTGGCAGaggaaaataaaccacacagcacaacacagctgGAGATATTTATTCTGTTAAATGTGAATCATCACACGTGAGCTAGAAACATTCCTTTAAATGAGAAGACCATTCGCCTTTTCTTTTGGTGGGTATCTGCAAAcattcctgtctgtctgtgtgtacacATCTGTATCACAGAATTTGCTTAAGAAATTCTGGATCTTGTTGCAGAAATCCTTTATAATGCAGTTTTTGTGAATTACAGTAGAGggcaatggggggggggggcaataaataaaaaccttttcagagaaatattaatgatattaagtaatatttaaaacaaacaatatgaaaaGGACAGAAGTATGTAAATGCCTTATTCCACAGACTACCAAGCTCTTCAGTGAGATCAGAAAGGGTCAAACCTACCTGTGCTTCCTCTGACAATGTATAGTGAAATAAAGTTTCAAATGATTCAGAAGTGCAGATTTTCAACAATAAATAGATGCAAATAGATCATACCAATTACGAATAGGGGTCATAAAACAAACCGAGACACCCTGGACCCTTTGGCTTAGAAAGCACTTTTCTTGATCAGCATTGTCTCCAGATCAGTACATTGAATTGCAaagtattgttttatacatagtTATATTTTATGATATGAAGTATATGTGTCTATAGAAAGATATATAGAAAGAAATAGTAAGGGGAGATATATGTTTTCCAACtactttattgatttaaaacctaattaaaaacCTCACTGAATTTCacaagtgtaaaataaaaaaaacactaattgtATCAAGGTTGAATAAaaaatttctgaaaataaattaacgcttaaacaaatgtatataattaaatagaaTGAATAATATATTGGTTAGTGCCAgagtaaaattaaatgaaaacatgtattcaatCATATATATTCCAAAAAATGTAACCTGACTGATGTTAGTaacatatacacaaaataagCTACTTTTAGGCATTTGGATTTAGAATAAGTCAaattttccatttccaaatgtattcatcacAGTTAAAGAATGTCCTAAACCACTCTCCCATGTTTAACATGCAACACTGCCTGATGTTCACACACAATGCTCTCATAGATCTGCCCTTGGCAAGGCTTTCACAATGCAATGATacctaaacaaaaaagaaaaagtatgaaatatttttaaacaatgaaaattctatacattttttgtccactgcatttttatttacataatttcagcattatacatattttaacaagtTTCAAATACAAGGAACACTGGTAtcttaacaaaaacacagatgcttagtatttacaattatttacaaaaggctactaaacacatatttataataaaggGGACAAACCCTGGGTAAACTCGCCTTGTTTAGGTTGAAATGGGGTTCTTTGCATGGACTGCCCCATGTCTGGATGAGAAGGCCTTTGCTTTGGTTGGTCCTTCTCATTTCTGAAACTTTTCACATAACTGCCttatcaatttttttaaattaataaagaaaaggaaaattacaAGAGTGGTCTTAATCTTGGTACATGGGGCTATAAACAGACTTAACTTACATAGACAGGAAAACTCTATTTAAACCAAATAATGCACTTCCAGAATAGAAGGGTGACTAATTTGTGGTCCTATACTGTCCttacaatgttaaaacaaatcccTGCGTGATGTAAAACAGTGGAACTAGAAACGATTAACTTTGTACATTTCGCCAGCGATGCTTATGAAACAAATTTGGTTTCTTTCCAAATGCGCCCATTTATTTCCTGTCAATTCTGTGTATGTCAAAGAAAATCGTAAATTGAAATTaactttaaagtaattaaaaaaaaaaaattcttgtAAACTTctctcaatatttttaaaaaatcacgGCAGCTAAATTACACTCAACTTTACAATTACTTTTTCTTGATTAGAGATTCTGTACTAGCTTACAATGCACTTTTGTTAAGTTAGTTGGAATCAGATTCTCCCAGCTAGATCACTTGTCAATCAAATCAAACGTTCaggtttgtttctctttcttcagGATCCTCCACCTGTCCTTCAACTGAACACCAGTGCGGTCTTTAATTTTGCTATTTCTAAGTATTAGGCTCCAGTTTCCTTCACCAAATCGCTTCACTCCTAACTTCAGCTGCATGTCTTCTTCATAAGTCCAACgctttaaagaacaaaaagaatGGTCATGTATGCTTGGAAAAAATATTCAACCTATATACATTCCTTCTACTGATATGTTcatattggtaaaaaaaaaaaaagcgtaaCATTAAATACCAAAtagttaataaagaaaatgtatgtttttaattgtattcctcTTTTTTACTAGTTGTAAATGTCTTATTATAAAGGTGATAATGTCactgtaggaaaaaaaaaaagaatggcaTCCAATAAACCTCAGAA

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019442 True 4123 mRNA 0.38 5 20564046 20574616

Neighbor

gene id symbol gene type direction distance location
AMCG00019439 NA coding downstream 156454 20377818 ~ 20407592 (-)
AMCG00019434 NA coding downstream 210952 20352154 ~ 20353094 (-)
AMCG00019436 eya1 coding downstream 285695 20207817 ~ 20278351 (-)
AMCG00019435 eya1,LOC107758809,LOC107657823 coding downstream 366912 20193251 ~ 20197134 (-)
AMCG00019438 NA coding downstream 371042 20097386 ~ 20193004 (-)
AMCG00019443 NA coding upstream 20154 20594770 ~ 20599493 (-)
AMCG00019449 stau2,LOC107754214,LOC107560262,LOC107691439 coding upstream 108646 20683262 ~ 20703828 (-)
AMCG00019447 stau2,LOC102777375 coding upstream 153424 20728040 ~ 20730981 (-)
AMCG00019448 TCEB1,tceb1,tceb1b,LOC108426597 coding upstream 196914 20771530 ~ 20776598 (-)
AMCG00019452 NA coding upstream 246100 20820716 ~ 20823757 (-)
G34148 NA non-coding downstream 14346 20478257 ~ 20549700 (-)
G34006 NA non-coding downstream 1083078 19467076 ~ 19480968 (-)
G33830 NA non-coding downstream 1948792 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 2347304 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 2365889 18179089 ~ 18198157 (-)
G34277 NA non-coding upstream 863299 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 971592 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 2544185 23118801 ~ 23120960 (-)
G34476 NA non-coding upstream 2635625 23210241 ~ 23286999 (-)
G34502 NA non-coding upstream 3001911 23576527 ~ 23578285 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 1109077 19442395 ~ 19454969 (-)
AMCG00019417 NA other downstream 1262499 19294812 ~ 19301547 (-)
AMCG00019396 NA other downstream 2122065 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 4842594 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 5572050 14951842 ~ 14991996 (-)
AMCG00019446 ube2w other upstream 168914 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 2096031 22670647 ~ 22744182 (-)
G34470 NA other upstream 2573245 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 3477395 24052011 ~ 24094664 (-)
G35067 NA other upstream 8943380 29517996 ~ 29521984 (-)

Expression


Co-expression Network