AMCG00019443


Basic Information

Item Value
gene id AMCG00019443
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20594770 ~ 20599493 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019443
CGCAAACACACCCACGGCTATGGAAACGAGCCGGTAACACAGGAGCGCCGCAGCCTCCGCCAGCAGAGGCCGGTCCGTGTCACTAAGCACCGGCAATGGCTGAAGTGGGCGGCTGCTGAACCGCACTGTGGACCACCGTGATATCGGTGATGGCGCTGCCCAAATTAGTGATGTTCGCCGCAGCCAGCGATGTGCGGGACAGCAGCCCGGCCACCGTGCAGCTGCTGGGGCGCTTCGGTGGGCTGGGACCCGTCCGAGGGAAGGGCGCCGGCGGGGTGAGGAGGAGAAACCTCGGGGCTCAGCATGTACAGCTGGGCCaatcaaAGGGTGTAAAGGGTTCACAAGCCACCTGCATCATTGAAGGGTCCACCTTTTCATCATTTATACCGAAAGATGACCGGACATTGACTGGATGTGGCTTTGACCACAAATGTCCTGACAAAGAGATGTCTGAAAAACTTTTTCTGTTTGAGAAGCAGCGGAGGGATGGCACATTAGATTCTAAGTATGAtttcaaagCGTATGCCTACGCTGATCCTGTGCACGGAGCCCCTGCTTCTTTCATTCAAAGACTGTCGGAAATCTCGTCTCTAGAAAGTGAGACTGTGCGGCAAGAGAGAATTAAGAAGCTGAAGAAGAACAAGAGACAGGAATCCTACAAACAGTGCCTCAGTAAGGAAAGCCAACAGCAATCCTGTAGTGCCAGAACATttcaactttcaacttttttccccacaaaatAAACTGGTGCTGTGTCTAAGTGTTGAAAAAGCATCTTAGAAATGCTTTTGAAACAAAAGTTGAATTGACATCTTCACAGATGCATTCATGTTAAATTTTTTGTATACAGTAAATTGAAGCCaactctgttttgttttttttactgaccaggaatcacaaataaaaaaggcttgAGTTCAGTCTTTTTTTGGATCTGCAGAGTCACTTGTTTCAGCTTGTTTCCCCTGCTGGTGTATAAGATCACAGTTGGATGGGGGACCTATATATTGTGTAGCATCCTAGAAGTTTGTTTCCGG

Function

GO: NA

KEGG:

id description
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019443 True 1037 mRNA 0.49 4 20594770 20599493

Neighbor

gene id symbol gene type direction distance location
AMCG00019442 NA coding downstream 20154 20564046 ~ 20574616 (-)
AMCG00019439 NA coding downstream 187178 20377818 ~ 20407592 (-)
AMCG00019434 NA coding downstream 241676 20352154 ~ 20353094 (-)
AMCG00019436 eya1 coding downstream 316419 20207817 ~ 20278351 (-)
AMCG00019435 eya1,LOC107758809,LOC107657823 coding downstream 397636 20193251 ~ 20197134 (-)
AMCG00019449 stau2,LOC107754214,LOC107560262,LOC107691439 coding upstream 83769 20683262 ~ 20703828 (-)
AMCG00019447 stau2,LOC102777375 coding upstream 128547 20728040 ~ 20730981 (-)
AMCG00019448 TCEB1,tceb1,tceb1b,LOC108426597 coding upstream 172037 20771530 ~ 20776598 (-)
AMCG00019452 NA coding upstream 221223 20820716 ~ 20823757 (-)
AMCG00019451 jph1 coding upstream 262639 20862132 ~ 20869165 (-)
G34148 NA non-coding downstream 45070 20478257 ~ 20549700 (-)
G34006 NA non-coding downstream 1113802 19467076 ~ 19480968 (-)
G33830 NA non-coding downstream 1979516 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 2378028 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 2396613 18179089 ~ 18198157 (-)
G34277 NA non-coding upstream 838422 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 946715 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 2519308 23118801 ~ 23120960 (-)
G34476 NA non-coding upstream 2610748 23210241 ~ 23286999 (-)
G34502 NA non-coding upstream 2977034 23576527 ~ 23578285 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 1139801 19442395 ~ 19454969 (-)
AMCG00019417 NA other downstream 1293223 19294812 ~ 19301547 (-)
AMCG00019396 NA other downstream 2152789 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 4873318 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 5602774 14951842 ~ 14991996 (-)
AMCG00019446 ube2w other upstream 144037 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 2071154 22670647 ~ 22744182 (-)
G34470 NA other upstream 2548368 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 3452518 24052011 ~ 24094664 (-)
G35067 NA other upstream 8918503 29517996 ~ 29521984 (-)

Expression


Co-expression Network