AMCG00019444


Basic Information

Item Value
gene id AMCG00019444
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20543587 ~ 20545758 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019444
ATGTTTGTAAGAACGGAGCTTCAAGCATCCGTATTCCAACATATCGCTAATTTGTATGGTCTCTCTTTTTCATTGCAGGTTTTGGCAATAATATCTATCCTGTTCATCGTCCTGTCAACCATCGCACTGTCCCTCAACACCCTACCCGAACTGCAGGAGATAGATGAGTTTGGACAAGCCAATGACAATCCCCAGCTCGCGCATGTGGAGGCTGTGTGCATCGCCTGGTTCACGATGGAGTACCTCTTGCGTTTCCTCTCTTCTCCAAATAAGTGGAAGTTTTTTAAAGGCCCATTAAATGTGATTGACTTGTTAGCTATATTGCCCTACTATGTAACCATTTTCCTGACTGAATCGAACAAGAGTGTGCTCCAGTTCCAGAACGTCAGGCGAGTCGTCCAGATATTCCGAATCATGAGGATATTGAGGATCCTGAAACTGGCCAGACATTCCACAGGACTGCAGTCTCTGGGCTTCACTCTCAGGCGGAGCTACAATGAACTGGGACTGTTAATATTGTTCTTGGCAATGGGGATAATGATATTCTCAAGTTTGGTGTTTTTCGCAGAGAAGGACGAAGATGCCACCAAGTTCACCAGCATACCTGCCTCATTCTGGTGGGCTACCATCACCATGACCACAGTGGGCTATGGTGACATTTACCCACAAACCCTTTTGGGAAAAATAGTAGGTGGACTTTGCTGTATTGCAGGGGTGCTAGTAATAGCCCTGCCTATCCCTATCATTGTAAACAACTTCTCAGAGTTCTACAAGGAACAAAAGAGGCAGGAGAAAGCTATCAAGAGGAGAGAAGCCTTGGAGAGGGCAAAGAGGAATGGAAGTATTGTTTCTATGAACCTGAAAGATGCATTTGCTCGCAGTATGGAGCTGATGGACATAGTAGTCGACAAAGGTGACGACAAAAGGTCCCAAGAGAACAATCTCTCGCCAAGTAAGTGGAATCTGACCAAGAGTCCAGTGTCTGAGACGGGCTCACAAAAGTCCTTTGAGACTAAATATCAGGAGGTTGCTCAGCAAGGCTCTCAGgaacatataaataattctaATGATAGCCCACAGCACCTAAATGCTCAAAAACTGGAGGAGATGTACAACCAGATGACTAAAGCCCAGTCAAATCTGAACCTAAACACAACCGATGGAGATGAAATTGAACACACACCAAAACAGGAAGAAGAACTGGAAATGAAGGTGGTTCCATCACCATCTGATCCACTACTAAAAGAAAGGACAGTGACAGATATAAGAAGTATATCTAGCATTGACAGCTTTGCAAGTTGTGCGACCGACTTCACAGAGGCTGAAAAGTCTCCAATTCCACCTAATACAGCAGCTTTGCTACAGATGAGACACCCAAATGCCCCCCGTCTCAAGGAAGACATGCAGCCACCCCCTCCAGTTGATGAGACTGAGGAAACAGCCAACCAAAGCACCATTATAAAGGATGGCTTATATGAATTCATACCATACAATCCAGACAGCAGCATGTTTTCATCTAAGCAAGACCACCATGAATTTGACAGAGTAGTGGATAATATCAGAAGCTCATTAAGAAGCAATAACCCTGCAAAGACAAAAGGTCTCAAAGTGAATTTTATCGAAAATCCAGGTGGTGCTCCACAGACCCCCCCCAGCACTGCCAGGCCACTGCCAGTGACAACGGCCGACATGATGACATCATCTCCGCAGCATATCAGCACCATTCTGTTGGAAGACAACTCCCCACAAGGAGAGAGGCCATCTCTCAGCTCCGACTTGGCAGCACTTGAACAAGTCCCTCATAAGGAATCACCTCAGTGTGCGCAAAAAGGCAGATTAGCTTTTCAGTCTAAAGGACGGAAAAGCTGCATGGATCCAGGCAGTGATGAAGAAGGCAGGTGTTTAGATTGCCATGAGGGAGATGATGGACAGAATCCCtccaaagaaaaccacaagGAGAAGAATCATGTTGAAGATGCAGCCATTGTAGGCACTTCTTCACCAAAAAGTACCACACATAACTGCACTCAAGGTCCAGTCCATGCTGTCGGAGAAGGAAAGAATGACAATAACCCAAGTGGACTCAAAGTGGAAAATCACATGTTTACACCAGAGATCCACATAAGGCCTGGGGATGGTGGTTTCTCACCTACATGTGAAACCAGCATGTGA

Function

GO: NA

KEGG:

id description
K04886 KCNB2, KV2.2; potassium voltage-gated channel Shab-related subfamily B member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019444 True 2172 mRNA 0.46 1 20543587 20545758

Neighbor

gene id symbol gene type direction distance location
AMCG00019445 kcnb2,LOC108426548,LOC107657825,LOC107560266 coding upstream 79701 20463323 ~ 20463886 (+)
AMCG00019433 NA coding upstream 421053 20115324 ~ 20122534 (+)
AMCG00019425 NA coding upstream 665724 19847157 ~ 19877863 (+)
AMCG00019426 NA coding upstream 806717 19726585 ~ 19736870 (+)
AMCG00019422 zgc:162928,c23h8orf34,LOC105890107,LOC107686688,LOC107758299,LOC107585009,LOC107695418 coding upstream 854973 19680768 ~ 19688614 (+)
AMCG00019440 NA coding downstream 9949 20555707 ~ 20565280 (+)
AMCG00019441 rdh10,rdh10a coding downstream 66588 20612346 ~ 20626037 (+)
AMCG00019450 NA coding downstream 231498 20777256 ~ 20778916 (+)
AMCG00019453 gdap1 coding downstream 328672 20874430 ~ 20878814 (+)
AMCG00019455 LOC107092069 coding downstream 406661 20952419 ~ 20955046 (+)
G34093 NA non-coding upstream 447137 20095318 ~ 20096450 (+)
G34086 NA non-coding upstream 465133 20075178 ~ 20078454 (+)
G34084 NA non-coding upstream 472023 20071336 ~ 20071564 (+)
G33913 NA non-coding upstream 1333877 19207194 ~ 19209710 (+)
G33874 NA non-coding upstream 1616300 18927047 ~ 18927287 (+)
G34183 NA non-coding downstream 87319 20633077 ~ 20635272 (+)
G34192 NA non-coding downstream 127229 20672987 ~ 20746971 (+)
G34204 NA non-coding downstream 225768 20771526 ~ 20776616 (+)
G34235 NA non-coding downstream 544386 21090144 ~ 21090416 (+)
G34278 NA non-coding downstream 915924 21461682 ~ 21461891 (+)
AMCG00019428 LOC107595150 other upstream 1088450 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 1249379 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 1522175 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 3090928 17449320 ~ 17452659 (+)
G33406 NA other upstream 4461644 16043942 ~ 16081943 (+)
G34170 rpl7 other downstream 61716 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 2069865 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 2640058 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 2687512 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 3126367 23672125 ~ 23695801 (+)

Expression


Co-expression Network