AMCG00019446 (ube2w)


Basic Information

Item Value
gene id AMCG00019446
gene name ube2w
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20743530 ~ 20765496 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019446
CTGCGTCTCTCACTCTGGCGCAGGGGGTTTCCAACATGGCGTCGATGCAGaAAAGGCTACAGAAGGAACTATTAGCTTTGCAAAACGATCCGCCCCCTGGAATGACGTTGAATGAGAAGAgtgtgcaaaatacaataacacaGTGGATTGTAGATATGGAAGGAGCCCCTGGTACGCTCTATGAAGGAGAGAAATTTCAGCTGCTTTTCAAATTCAGTAGTCGGTATCCTTTTGATTCACCTCAGgTAATGTTCACTGGTGAGAATATACCTGTCCATCCTCATGTTTATAGCAACGGTCACATCTGTTTATCCATTTTAACAGAAGATTGGTCTCCAGCTCTCTCAGTGCAATCAGTTTGTCTTAGCATTATCAGCATGCTTTCCAGCTGCAAAGAAAAGAGGCGGCCTCCTGataattcattttatgtaaGAACATGTAATAAGaatccaaagaaaacaaaatggtggtATCATGATGATACATGCTAATATACAACTTTGTAATACTCCTAGAAGAAAATGTCCTACTGAGTACATAAGCACTTTGATCATTCAGTCTTTGAACTTTAACCTTTGACTGGAGCAATGGACACCAGGCGCTGGAGACTTCCATTGACTGCATTTCTACAACTGGGCTTTTGGATGCATTATAGTAGttggctttaaaaataaagaaaagaatgCACCCAACATGGATTGATGTGCTGTAAGGTAGTTATGCGGAACATGAGGAGATTCTAGAACGAAG
>TU42823
GTCACCCAGCCTGCGTCTCTCACTCTGGCGCAGGGGGTTTCCAACATGGCGTCGATGCAGaAAAGGCTACAGAAGGAACTATTAGCTTTGCAAAACGATCCGCCCCCTGGAATGACGTTGAATGAGAAGAgtgtgcaaaatacaataacacaGTGGATTGTAGATATGGAAGGAGCCCCTGGTACGCTCTATGAAGGAGAGAAATTTCAGCTGCTTTTCAAATTCAGTAGTCGGTATCCTTTTGATTCACCTCAGgTAATGTTCACTGGTGAGAATATACCTGTCCATCCTCATGTTTATAGCAACGGTCACATCTGTTTATCCATTTTAACAGAAGATTGGTCTCCAGCTCTCTCAGTGCAATCAGTTTGTCTTAGCATTATCAGCATGCTTTCCAGCTGCAAAGAAAAGAGGCGGCCTCCTGataattcattttatgtaaGAACATGTAATAAGaatccaaagaaaacaaaatggtggtATCATGATGATACATGCTAATATACAACTTTGTAATACTCCTAGAAGAAAATGTCCTACTGAGTACATAAGCACTTTGATCATTCAGTCTTTGAACTTTAACCTTTGACTGGAGCAATGGACACCAGGCGCTGGAGACTTCCATTGACTGCATTTCTACAACTGGGCTTTTGGATGCATTATAGTAGttggctttaaaaataaagaaaagaatgCACCCAACATGGATTGATGTGCTGTAAGGTAGTTATGCGGAACATGAGGAGATTCTAGAACGAAGTTATTCctattttaaatcttttttttatatatatatatataatataatgctcTCTTCCTTTGTTTTGACACTTTTTCAGGTCCTCATGTATTGTGCAATAACAAATGATTGATGCATGCTTGGGCCTACAAAGACAGATTAAATCCAAATCAATTAGTTCAACTTTAAGGGATTTTCAGCATCTTAGCCCCAAGGAAAATGCTTAATCTTTTATACTGAAATTATATGCACTGTGAAAATGACTATGAAAAGACAACTTAGTGTTACATTTAGCACCTAGTTCTACTGAAAACTGCTCACCACACTTTATATTCAGgtaataggttttattttattatatattatattcttgAAACGGTTGAGTAGTGAAAACTAGTTTTCcttcactgtttttatttattctttccaGAGATTGTCCCCTATAAGAGTGTTTTCCCAGTCAAAATGTGGGCAGAAGCTTCAGTtaaatttgctttattattcaCTAAAGATATCTGTGTAATAGTCTCTACATATTGGCTGCATCTAAAGCTGTTTGCCAGCCCTCTCTGTTGGCCCTGATGTGTGCGAGAGGAAGAAAAACCACCTTTCTTGTTCTGAATGTCTGAAAAAAcgatttattttgtgttgttgaatTTTTATGTTCTATTTTGTTGTAAGATTGTCATGCTTCTAAAATACTGTATCTGATTTGAAAAGCATTCTTTTTTGTAACTTATTTCTCTTTGATAGTAATTATCAccttgaattttaattattggggaaaaaaataatattgaaggATGCTCAATGTGTTGGGGGAAAAAGTGTGGATGTCTTTAACTTCCATTTACTATTCTCCAccagatgtttttatattgagGTTAGTAATGTCTGAGAGCAattgagaagaaaataaaagttcttCATCCCCAGATTATAAGACTCTAATAAGCTAATCCTCCTAGTCATATCTAGTATCTGGCTCAGGTACTTTTTTCAGTGAGTAAACTCCTACAATTGCTAACCAATATTTTGAGTTTCAACTATAGTGATATTTGCACCAAAAAGACTGTTACATTGTCAACTATACTTCAGATGTCTGCGAAAAAGTTGttataaatgtatctttttaaaataaataaaagcctacTTTAGCAATTAGTGCAAGGAAAAGGTGATTTTCTTAATGATTCAATCTGTGAAACCTGTATCTACCATCGCAGGTTGCCAGACCTGGATTCACTTCATATTCTATAGATCGTTTGAAGTTTGAGATACATAATGCAGTGATTAATCAatctgcttcttttttttttcccattttaagttgttttattcattcttGAAAATATACCTTCTCCTCTGCACTTTTGGATAAATAGGCCCTGTACagtaatttgtataaaaaaaacaaaaaaaaacaaacaaaaaaaaaaaaaacggtaaAAAAAAGTCAGTCACATATTTGTTAAGCAGGATCTGCTTTTTGGCACAATTCTCTCTTCATAGTATCAGTGTGGGTAGCATCTAAGctaaaaaaactacaaaaaaaaaaacagctatcAGTGTCTCACAATAACAAGCTCCGAATTGTACaaattttaaaactatttgaTTTGCTTTAGCTATCTCTTTAGATAAGCACGATTTGTGACACCTCcctgttttgctttttggttttggtttttgtgTTCCTCATCTGGAAAACAGATGGTAATTTAGCATGACTGAAAACCTTTTATGAAAACATCCATTTCTATCAAGTGATTGTTTTCTACATAACTAGAGTAAACCATTAATGTTTAGCAGCCAGTCATTTTCCTCTTACATTAAAACTTTGCTGCCAAAATACTGTCAttagaaaatgaacattttaaatcttaaaaacaaacaaacatgtttttctctttttcattaaGTGCTTTCATAGTTGCTCTCAAACGATTCTGACTTTTTATTCTGAAGTTATTGCAGTAAGCTCTAGGAACTGTTGTCTGTTTTGAAAGAAATATGCATCACCATCCTCAAATGCTTGCTTTTAGAGTTTATATAAAATTCTTTAAAACAACTCAATAAATCAGTGAAAGAATTGTTCGTACCAAAAAAGAATTTGCTGCTTGAGGTGAACcttcaaattcaatttcagttttttttttatttttatttattttttattctcccACTGATCTGGAGCTTCTGGAAAAGGGTGGCGCTACTTGCTTCAATAAATCTTGgcctttgaaatgtattccatAGATATAAAGTGCTATGTACACACACTATACTAGGCATATTGAGCTACCATTTTAACACCTGCTGCCCACTGATATTATTGAGAAACACACTAAATGTGCCTACATTGGAAAAGTACATggatttaaatggtttaatacacatacattacagtTAGTGCTGGGACAAATGTTGGGATTTTTCAAAGCAATGTGTCTTTGGACAGTTCTTATCAATGAACAGATTtctagatagacagacagagattgTCATATAACAGCAGGATTTAAAAAGTTCTCATCTGTggtttttaaatttaagtttttGAGTAAGTTGTGGTTGGgtgactttaaaaaacaaaaaaacaggcttgtgtatttgttttaataaactttaaGTTAGGGgtactgtaaattaaaactttttttttttttttagaacaatTGTAGTTATGTAAAAATGACATGTAAGCTCTGCCtgttaatttaataaagcaGTGTGTTACTGTTCTATACAATGTACGTACTGCATTCTGTTGACTGGCATTGTGTGGTTAAGAGTAAAGTATTCTTGGactgtttcagttttaaaccAAGGAGCAGAAACGAAAAATCGGCCACAGTTGGTGCGTTCGTTTTGTGTTACTGAAGAATGAAATCATGttggttttgttgctgttttgattttgtcatgTTGTTCACCCATCATGTTATTAATAAGTTACATCAGGACTCCTGCCTTTTCTAGACTTTCACACTTTCAAACTGAGGGTTTCTTTATACCAGAAGTGCAATGAGAGGTACATGTAGAAATGTTTTAGTTATTATATTAATCAGAGTTGATTTAGTGGGTTATTACTGAAACGTCTGCTTCAACTTGTGGCACCTgaagaatgtattgttttatttcaactaATTGAACTGAGTAAGATTATATGTGCATAAATGCCATATTTGTCCCTgc

Function

symbol description
ube2w Enables ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Involved in protein K11-linked ubiquitination and protein monoubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 W

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0071218 cellular response to misfolded protein biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019446 False 750 mRNA 0.41 6 20746707 20765486
TU42823 True 3937 TUCP 0.34 6 20743530 20765496

Neighbor

gene id symbol gene type direction distance location
AMCG00019447 stau2,LOC102777375 coding downstream 12549 20728040 ~ 20730981 (-)
AMCG00019449 stau2,LOC107754214,LOC107560262,LOC107691439 coding downstream 39702 20683262 ~ 20703828 (-)
AMCG00019443 NA coding downstream 144037 20594770 ~ 20599493 (-)
AMCG00019442 NA coding downstream 168914 20564046 ~ 20574616 (-)
AMCG00019439 NA coding downstream 335938 20377818 ~ 20407592 (-)
AMCG00019448 TCEB1,tceb1,tceb1b,LOC108426597 coding upstream 6034 20771530 ~ 20776598 (-)
AMCG00019452 NA coding upstream 55220 20820716 ~ 20823757 (-)
AMCG00019451 jph1 coding upstream 96636 20862132 ~ 20869165 (-)
AMCG00019456 NA coding upstream 469272 21234768 ~ 21242674 (-)
AMCG00019457 NA coding upstream 481292 21246788 ~ 21293737 (-)
G34148 NA non-coding downstream 193830 20478257 ~ 20549700 (-)
G34006 NA non-coding downstream 1262562 19467076 ~ 19480968 (-)
G33830 NA non-coding downstream 2128276 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 2526788 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 2545373 18179089 ~ 18198157 (-)
G34277 NA non-coding upstream 672419 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 780712 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 2353305 23118801 ~ 23120960 (-)
G34476 NA non-coding upstream 2444745 23210241 ~ 23286999 (-)
G34502 NA non-coding upstream 2811031 23576527 ~ 23578285 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 1288561 19442395 ~ 19454969 (-)
AMCG00019417 NA other downstream 1441983 19294812 ~ 19301547 (-)
AMCG00019396 NA other downstream 2301549 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 5022078 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 5751534 14951842 ~ 14991996 (-)
AMCG00019487 NA other upstream 1905151 22670647 ~ 22744182 (-)
G34470 NA other upstream 2382365 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 3286515 24052011 ~ 24094664 (-)
G35067 NA other upstream 8752500 29517996 ~ 29521984 (-)
AMCG00019556 NA other upstream 8770248 29535744 ~ 29550162 (-)

Expression


Co-expression Network