AMCG00019453 (gdap1)


Basic Information

Item Value
gene id AMCG00019453
gene name gdap1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20874430 ~ 20878814 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019453
ATGGAGTCCGTCAGCAGCAAAGAGTCGCACGGAGAAGAAGTCGCCACAATAAAAGAAGATATTTCAGAATTACAAGATGAAAGCATGCCATTAGTTGAAAGGACGGAGAAGAAGGAGTCCAAACTCATACTTTACCACTGGACCCAATCGTTCAGTTCTCAAAAGGTTAGGCTTGCCATTGCAGAGAAGGGCCTACAGTGTAAAGAGTATGATGTTAGCCTTCCCTTAAGTGAGCACAATGAGCCATGGTTCATGAGATTAAATCCTGCAGGAGAAGTGCCAGTTCTCGTCCACAATGATACTATCATTTGTGATGCTACACAAATAACAGATTATTTGGAACAGACTTTCAAAGATGAAAATACACTGAGGTTGATTCCAGAAGAAGGGAGCATGTACTATCCTAGAGTACAGCACTACAGAGAGCTTTTGGACTCCCTGCCCATGGATGCCTATACCCATGGCTGCATTTTACATCCTGAGATAACAGTAGATTCCCAGATACCTGCATATGCAACAACAAGGATTCGCAgTCAGATTGGAAATACAGAGTCGGAACTAAAAAAGCTTGCAGAGCAACACCCAGAGCTTCAGGAGGCTTACATTGCAAAACAGAAGCGTCTCAAAtcTAAATTACTGGATCATGACAATATTAAATACCTGAAGAAACTTCTGGATGAACTGGAGAATGTCCTGGACCAAGTGGAGACTGAACTTCAGagaagaaatgaagaaacacCAGAAGAGGGAAAGGAGGCTTGGCTATGTGGTGAGTTCTTTAGTGTTGCTGATGTCTCTCTGGCTGTTACCCTCCACCGGCTGAAATTCCTAGGCCTTTCAAGAAGATACTGGGGAAACGGAAACCGCACGAATGTGGAAACGTACTATGAGCGAGTGTTGAAGAAAAAGACCTTCAGGAAGGTGCTGGGACATGTCAACAACATACTGATATCTGCTGTCTTACCAACAGCTTTCCGTGTGGCAAAGAAGAGAGCCCCCTCTTTTTTGGGGACCACTTTTTTGGTTGGAATATTAGGAGGAATGAGTTACTTTGCTTTCTTGTACCTTAAGAAGAGGCTCATAAGTTCA

Function

symbol description
gdap1 Acts upstream of or within neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial outer membrane. Is expressed in central nervous system and cranial ganglion. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease; Charcot-Marie-Tooth disease axonal type 2C; Charcot-Marie-Tooth disease axonal type 2K; Charcot-Marie-Tooth disease recessive intermediate A; and Charcot-Marie-Tooth disease type 4A. Orthologous to human GDAP1 (ganglioside induced differentiation associated protein 1).

NR:

description
ganglioside-induced differentiation-associated protein 1 isoform X1

GO: NA

KEGG:

id description
K22077 GDAP1; ganglioside-induced differentiation-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019453 True 1089 mRNA 0.43 6 20874430 20878814

Neighbor

gene id symbol gene type direction distance location
AMCG00019450 NA coding upstream 95514 20777256 ~ 20778916 (+)
AMCG00019441 rdh10,rdh10a coding upstream 248393 20612346 ~ 20626037 (+)
AMCG00019440 NA coding upstream 309150 20555707 ~ 20565280 (+)
AMCG00019444 NA coding upstream 328672 20543587 ~ 20545758 (+)
AMCG00019445 kcnb2,LOC108426548,LOC107657825,LOC107560266 coding upstream 410544 20463323 ~ 20463886 (+)
AMCG00019455 LOC107092069 coding downstream 73605 20952419 ~ 20955046 (+)
AMCG00019454 NA coding downstream 99119 20977933 ~ 20989120 (+)
AMCG00019459 dok6,LOC107741641 coding downstream 322049 21200863 ~ 21209681 (+)
AMCG00019460 NA coding downstream 452448 21331262 ~ 21331771 (+)
AMCG00019464 NA coding downstream 1011249 21890063 ~ 21893971 (+)
G34204 NA non-coding upstream 97814 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 127459 20672987 ~ 20746971 (+)
G34183 NA non-coding upstream 239158 20633077 ~ 20635272 (+)
G34093 NA non-coding upstream 777980 20095318 ~ 20096450 (+)
G34086 NA non-coding upstream 795976 20075178 ~ 20078454 (+)
G34235 NA non-coding downstream 211330 21090144 ~ 21090416 (+)
G34278 NA non-coding downstream 582868 21461682 ~ 21461891 (+)
G34378 NA non-coding downstream 1697160 22575974 ~ 22577472 (+)
G34432 LOC107584984,LOC108256437,LOC107701635 non-coding downstream 1901417 22780231 ~ 22783116 (+)
G34433 NA non-coding downstream 1910194 22789008 ~ 22789463 (+)
G34170 rpl7 other upstream 263541 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 1419293 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 1580222 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 1853018 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 3421771 17449320 ~ 17452659 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 1736809 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 2307002 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 2354456 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 2793311 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 3166875 24045689 ~ 24086481 (+)

Expression


Co-expression Network