AMCG00019457


Basic Information

Item Value
gene id AMCG00019457
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 21246788 ~ 21293737 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019457
ATTAAATTTAGTAAAGACAATTTAGAAAGTTTAGATGAACGCTAGCCTCGTCTTTAACCCGGAAGCATATGTCATAGCAACGCTGGCGCGGCTGTTGAAAACAAGCCCGGGTTTCTGCCGTTGTGATGCGTAGGTTGGACTACAGTTTAACTGTAAAACAGGACTGGATAGTcctatgtgtgttttttttatttattttttcactagGCACTGAAGTTACAGAATATGGAGCTATCAACCATTTTGAAGAAAATCAGTCATCAACTGGTGGAAATTAGAGAGAGGGCTCTCAAAAACATTATATGTAAACTTGACCATGGCCTAATCTCTGTTCCTGATCTTGTCCAAGAAAAGatgctgtttgtttgtctgcttgAGTGGTTTAATTTCCCAGAAGTACCAATGCAAGGAGAAGTACTGACCCTGCTGGATAATCTAGTCAAAcACCCGACTGCCGCCCAGCTGCTCAGGGAAGTGGGAGCTGTGGAGTTTCTGTCTCTGCTTCGGCCCAGTTTGGAACCAGCGCTGAAGGCTGTCGTTGACAGTATCTTGGATGGGTTGTTTCAGATTCCAGAAATCCCTCCTGATTATCCTGCTATTGTttaccagcagcagcagcagcagcagctggtaACTTTAGAACATGAAGTTGTTCAAATAGACGAAGAGACACCAGTGATGGGATACTTCCAGAAAAACGCAGGAAATACAAGGCAATCCGACATTCCTCCACAAAGAATAGCAGTAAGCGATTCAGTGAAGTGTTTGAAATTTTCCACTTTTCCCTGGTTGGCTTTGACAACAACAGATAGACACATTTTGACATCGAATGAAAGCTCCCTGAGAAGCAGCAACCACAATTTAGTTCGCACAACCTGTGAACTACTTCAGGATGTCATTATGCAGGATTTCCCTGCTGAGATTTTCCTTCAACGGCCAAAGATAGTGCAGAATCTTCTCTCTCTACTGAAGCTAAATGCTGACAGAAGTGGGGCTGGTTACTTAACGCTTCAAGCCGTTGCCTGCCTGCAGCAGTTGTGTACTAACTTGAGGAGCAGGCTTCTCTTTCACAGAGATCCGAGCTTCCACTCAGTCAAGCAAGAATTCCTCGGTGTCCTACTCCCAAGACATCAGAGGAACCCATCGTTCTCACAATCCTTCTCCCGAGGATTGCAGTCCCAGGCCATCTGTGATTGGGCGCACAGTGGCAGCAGTTCTCACAGGGTCGCTACCTCCAGGCTGCCGGCAGCGTCTCCATTAGACACAGCTCATCTGGAGCTGCCGGAGATGGAGAGTGAGGACGCGTTAGAGCTGCGGTTCCGGCAGCTCAGTTTGGCTCAGTTCTGTGTGGCTGTCGTGGAACATGCCTTGCCCCTCCTCAGGACAGAAAGCATGAAAACCTTCCTGTGTGTCCTGGAACTATTGTCAGAGGTTTTGCTGCTCCTGAAAGACAGTATTTCTGAAGATGTCTGGGATGACAGCAGCCTAATTGGATTGGAATTGGCAAGttacaatattacatattttaatgatAAAGACAAGCTACAGGTGTCGATGGATTTTTTAGGAGACCTCTTAGCTCATCACTACAACGCCAGCTCATCAGATCAAACAGAATCTGTTTTAGTTCACCACAGAATGGCGTACACCGGTACTGCAATCTTTACCATCCGGATGCTGCAGTCGCTCTTACCAGTGGAAAAGTCTAGTGAAAATTTACCAGAAACTACAGTGGAGGGCCTGTTTCTCCTCAGTATGGATATGCCGTTCAGCATGGTATTCCCAAGCATTCATGAATCGGCCACAGCCTACCTGGAGCAGGCCAGCTCCGAGAGTTACAGCACATACAGGAGGGGAGACAAAAATTGGCTGGAACTGGTGGAACTAGCAGATCAGGCCATAGATGGCTTTCCATATCATCAACACTTGCCTATTGTCAAGGAGTTCCTTGGAATCTGTTCTTTCATCTGGAAGTCTGCACAGTCAAGTCCTCTACTTCAGACCGAAAGTCAGAAGGTTTTTCTTAAACTATTGTCCCATCCTCTGCTCTCTGTGAAGATTGAAACCTATGCTTGCACACTTAATATTATTAAGGATTGTTTGGGAAtcaaaaatatcacaaaacCTGTGTCGTCTGTCTGCCAAGGAGTTCATTTTCTTCTGCATGTTCGTGTTCTATATGAAATTTGCACATTTGGTCTTCAGGATAAAGCAGAGAAGGTGAATTCTGCTGCCAAGGACATACTTCTTTTTCTGATGAAGGGACAATTGATGATGACAGCTCTAACTTGGAACAAATTCATTGAAGCAGTATATCCCATCATCCCCATATTGCAGGGTTATGCAAGCACAGAAGATGTGTTGGGAAACTGCGTTCTGCTCCTGAGTGAGACCTCAAGTGAAACTGGAGATGGGATGATTCCGAAAACCGCCAGGCTGAGAGCTGCTCTAAGACTTCTTTTCACCAAGCAACAGAAGGTACGAGACATAGCTGTTAAGCATTTAATGTGTCACGTCACCAACGCTGAAGGTGCAAGTGCTAAACGCCCATTATTGGAAAGTGGTGTGCTGTCAACTCTGCCTTCTTTGTATGTTGGGATCAAGTCAGTTGACATAAAACTTGATGATGCAGAAAAGTCTTTCTTCAAGATGGAGTCTGTCAGCAAACTTTACAATATCCTCACTTCAGAGACTGTTGACCTTGTACTCAGGAAATCTGCAGCAGAACAGCTAGCTGTTATTCTTCAAGATACAGCGATGCATGCAGTGCTGAAGAGCCTAGGAGTGACAGAAAGAGTAATAACCTTTATAAATGAAAGCGTAAACCGCAGTGTTAAGAATATGGACTGTCTTCTGGAGCCTTGCCTTTCTATTCTTCGTAAGCTTATGTATGCAGATCCAGTCCTACGGCACTCCCTGGCTCAGCAGCCTTCTTTCTTCATTATGCTCCTGAGAGCTTCCTTAatagtaaaagaaaatggaGGGAACTTGTCTGACGCTGCAgcattgatgtgttttttgctCTTTGATGAAGTTGCCAGAATGGATATTTGgaCAGATGATCAATCAGTCTGTGCAGTATCACCTCCTCCATTTTCTCTCCCTGTTTGGATCGTAAGAAGGTACAATCTGCCATTTGAAGTGCTTGCTCATCATGTAGTCAGTCCTTACTGCACTGTACTTCCACCACACCTGGACCTGTTAGCTTTCAAGCCTGCCTGGGAGATGCTCCAGTTTGCTTGGAATCGAGCGTGGTTCGGTGGGATTGATAACCTCCTGGATCAGCTGAAGAGCCATGGAACAGATTTTACAGAgttcCTATGTGATTTGAAGATGTCACCATCTCAAGTTGTGATGCTGAATGTGATTCATATTACCAGTGGCATTCGGGACTGTTTGCAGTGTATCCACACCGCAGTATCTCACAGTACTGTGAGTTCTGCCTTAGCGAGAATTCGCTTCTATCTTCTGAATGACAAGTTGGGTCTGAAGCAAGGTGCAGACAGTACTAAAAACATCTTGAGCACTCTGAAATGGCACAGTGCCATTGACAGGTTTCTTCAGGTTCGCCCAGCATGCAGAGAGGATGAGAAACTTCTTGTGGATGTTGTGGTTTTTCTGAGCAAGTATTTCAAAGAACGGAAGTCAGAATCAGATTATGAGGACCTCCGGTGGATTTTAGAGCTAGTTCTCAAACAGGATGAAACAAATACCATACTAaacttaataatacaaaaggaatCCCAAGTGCAGGGTGAAGTCGAAGAAATCCAGGCGATCATCAGCCAGAAACTTCAGAAAGAGCTAATGGTGTTCTTCAGTACCTTACTTACCTGCGTCATGTATGTTTCTGACAGgatGTGTATGGCCTTTGCAGGACCTTTTGAGACGCAGTTGGCTATCAGACTGCTGCAGTCCCTTAGAGTTTCAGATGCTCCACACTTCTATGGCCTTCCTTCACTTGAGAGGACATTGAAAGGGATGGTGCATGTCACCGTGCTCCCTGGATGGAGCTCACACTCCCCCTCTGTGGAGCCAGATTCACTCTGCATGAAATACCTAACTGGCCTTCTGGAGGTTATATCTTCATTTTACGTTGAATGGGGGGGGAATTCCATGTCTTTCATGGGTAAAGGAGTCACAAAGAATGCAGTTCTCTGCTTACTTCACTTGTCTCATGAAATGATGGCAGAAACAAAGAATAAGGACTGGGTGTCACTTTGGTCTCTGTCAGATGACCAAAACACTGAAGAACAGACAGCCTCTCGATTAGGGTTGGCTTGGCTTATCCCATTGTGGGTTGATCGGGACCCTGAGGTAAGGTTTGCCAGCCTTGGAGTTGGATCAGCGTTAACCTCTGTGGAAAGTGGGTGCATTGCCCTTGCTGCCAGCTGCCAGAACATTTCTGGAGGATTGTGGGGAACCGTGCTGAACATCCTTCTGGACCAAATGGAATGTAGCATGGTCCGCAGAGAGgCAGCATTTATTCTTCAAAACCTGCTGGTGATGCCCATGCCTGCTAATACTGAGGAGTCAAAAGACTTTGCTTGGCAGAGCCCGTGTGTGCATGATGAAGATTCGGGCCTGTCCCTGGTGGGCTTGCCTGCTCTTCAGGCCCTTATCTATCACTGCCAGTTTTTCGATCATACCAATCAAATGGTGAAAGCCTGCTATCTGGGCCGGCATTCCTTTGATTTAAACTTCTCACAAACTCCAAGTGATATCGTGGGAAATTATGTCAATGAAGATTTTGATGACTCAATGAGGCATTGGAGGGGCCCACCCAGCATTTCAAACCAAAGCCACATGTCAAGCTCTCTGTCTACATCCAGTACTGTAATACTTCCTGAAGGTACAGCAGAAGAGCAGACATCTGTCCTATCGTCCTCCAGAGTTCCTGTTCCAGAAACACCAGCCAACAGACTGATGGCTCAAGgTCAAAGTGATACAGACATGACAGATTCCTTAAGCTCACGGGACTCCAGGGTTTTAGAACAGTCCTCAGATCACTGTGTTATTGTTACACCCCATCTTACAGCAGCCATATGTGGACTGTTGACCAACCTGTTGGCTGTCTTACCAGATTTCACATTAAGTGCAATAAAGCAGAATCAGATCCTTGTATCTCTTGCCAGtttgattgaTGCTGGCATTCTGGAAAAATGTTTCTGGGAGCTTAGATCACCTGCTCTACTTCGAGGTGACCGTGAAGATATAACAAACCAGGTGATCAGCCTTTTCCAGTGCCTATCCAGTTTCTCCAAACTACTTCAGTCTTGTTTGGTCATAAACCCAGAACTGACGTATCAGAAGGACTTCATCAACCCATTATtgatcaatgtatttaatattctcACACTAAATCTCAATGACATTGACGCTGGGACAAAATGCACAGTCTACCATACTTGGGCAGACTTGTTTATGCTTCTGGCGACACTGTTGAAGAAGAGCGGTGATATGGCTTTCCCATCTGTTGCTGTAGTTCTAGGAAAGCAGTGGCATTCATTTGCAGGTACTATTTCCATATGTGTCGATCTTTCCTCCACACATTCCTCCCTGTACACTTCAGCTCTGCAGTTCTTGTCTGTGGTGCTGTCTGAAGAGGCAAAAAGACAGCTGGTAAATCCTGCCCAGCTGAACTCTGTGCAAAAGACCTCATTAACTGAGATCCTCAATGGTTCATCTGGAAGCCAATTATGTGAAGTGATACTGCAGagttttgagaagaaaacatttgaagatGGTTTGAAGAAAATGTCAGCAAGTGCTCTGATGTCATTGCTTGCTAGCAGTTCAAGTGCACAAACCCATGCTTTAAAAGCTGGCCTCATTGAGAGCTCTGTAGAGCGAATTAAACACATCCATGCACAACTGAACCTAGAATCCCTGAAACCTGGAAAAGCtatgcaaaagaaaaagGAGGAAAACTGTATGAGAGAGTTAAAGATGATATTGCAGATACTGAGAAACTGTCTTTATCATCATGATGAATGCAAAGTTGCAGCGACCGATTCTCGCCTAACTTCTGTATTGTATGCCCTCTGGCCTTGGTTTCTGTTGGATGATCCTGTAATGGAAGCAGCTTTGGAACTTCTATGTGTCTTTACAGCTAATTGTACCACAGCTTGCAGCTCCCTTTGCTGGAGTAGTGCAGGACCGAACAGTTTTCCAAGAGGTCCTGCAAGTACCTCTCTAATGCACAGCATCATGAAGCTTGCTACCCAGAAATCTCCTGAGAACAGCAATATACAGCAATTGGCTTTCTCTCTGCTCTCCAATCTCGCCATTTGTCACGACTGTAAAGGGCTTCTTCAGaagAGCAACTTCCTTCAAAACTTCCTCTCCTTGTCACTTCCTAAGCCAGGATCTAAATTGATTAGCCCCTTGGTGAGCCTGTGGTTAAAACTTTTACTGAACATGTCCTTTGGAGAAGACGGACAACAGATCATACTGAAGATCAATGGGAGTTTGGAGCTGCTCATAGAGATGTCTCGGTACAAACCGCGCAGCAGTAGGCCTGCAGCTCTCCTTATTCTGCACAACATCTGTTTCAGTTCGACCAACAAGCTAAAGATTCTGGCTAACGATAAAGCAGTGGGAGTGCTGTCATCCTGCTTGGAGAGTAAACTTCCAGACATCCAGGCTATTGGAGCTTCAGCCCTGTGGGCCCTGCTTCATAACTGTCAAAAGGCAAAGGTGACTTTAAAGAACCCGTCCATCAAATCCAAAGTAGATGACGCATACGACATGGCAAGAAAAGAATCGGCAAGCGCCAATGATGAACCACTGATTTCTTACCTACTTAAGTGTCTTGAAAAACTAACCTTCCTTTTGAACAATTAAGAAGCATTTCAATTGTGAATATTCTTCATTTCTACCACTACTAGAAAG

Function

GO: NA

KEGG:

id description
K16484 RTTN; rotatin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019457 True 6894 mRNA 0.45 49 21246788 21293737

Neighbor

gene id symbol gene type direction distance location
AMCG00019456 NA coding downstream 4114 21234768 ~ 21242674 (-)
AMCG00019451 jph1 coding downstream 377623 20862132 ~ 20869165 (-)
AMCG00019452 NA coding downstream 423031 20820716 ~ 20823757 (-)
AMCG00019448 TCEB1,tceb1,tceb1b,LOC108426597 coding downstream 470190 20771530 ~ 20776598 (-)
AMCG00019447 stau2,LOC102777375 coding downstream 515807 20728040 ~ 20730981 (-)
AMCG00019458 NA coding upstream 113724 21407461 ~ 21408830 (-)
AMCG00019462 NA coding upstream 364528 21658265 ~ 21658930 (-)
AMCG00019461 cbln2b,LOC107662558,LOC107727212,LOC107589986,LOC107657802,LOC107596058,LOC107741967 coding upstream 576278 21870015 ~ 21872862 (-)
AMCG00019474 NA coding upstream 911250 22204987 ~ 22216671 (-)
AMCG00019473 NA coding upstream 1274206 22567943 ~ 22580204 (-)
G34148 NA non-coding downstream 697088 20478257 ~ 20549700 (-)
G34006 NA non-coding downstream 1765820 19467076 ~ 19480968 (-)
G33830 NA non-coding downstream 2631534 18606141 ~ 18615254 (-)
G33765 NA non-coding downstream 3030046 18215608 ~ 18216742 (-)
G33758 rab2a non-coding downstream 3048631 18179089 ~ 18198157 (-)
G34277 NA non-coding upstream 144178 21437915 ~ 21438156 (-)
G34283 LOC102215562 non-coding upstream 252471 21546208 ~ 21546524 (-)
G34468 LOC103376870 non-coding upstream 1825064 23118801 ~ 23120960 (-)
G34476 NA non-coding upstream 1916504 23210241 ~ 23286999 (-)
G34502 NA non-coding upstream 2282790 23576527 ~ 23578285 (-)
AMCG00019446 ube2w other downstream 481292 20743530 ~ 20765496 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 1791819 19442395 ~ 19454969 (-)
AMCG00019417 NA other downstream 1945241 19294812 ~ 19301547 (-)
AMCG00019396 NA other downstream 2804807 18384867 ~ 18441981 (-)
G33381 ube2v2,LOC107732116 other downstream 5525336 15692482 ~ 15721452 (-)
AMCG00019487 NA other upstream 1376910 22670647 ~ 22744182 (-)
G34470 NA other upstream 1854124 23147861 ~ 23199608 (-)
AMCG00019500 pign other upstream 2758274 24052011 ~ 24094664 (-)
G35067 NA other upstream 8224259 29517996 ~ 29521984 (-)
AMCG00019556 NA other upstream 8242007 29535744 ~ 29550162 (-)

Expression


Co-expression Network