AMCG00019465 (LOC105921547)


Basic Information

Item Value
gene id AMCG00019465
gene name LOC105921547
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22270509 ~ 22284359 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019465
TAGGGTGAAGGCACAAAAACCATCCTGGAGAATACTAACAACTTGTACAGTTAAAGCAGTACACACACAGTAGATGTGAACCAACAGTTAAGAAGTACGTGCCTGTGATTTAGTAATGCAAACCAGTTACAACTGAGCCTAAAATGGAGCTGTACTGGTACATAATTGtcataatatttataatcatcAAGATTTTCTTCTACATTTGCTGGTACCGGTCTCGGCAGAGGCAGCTAGATGCGTACCTCAGTAATCCACGCAATGCACAGATTGTGATCGTTGGGGGAAGGGCCTACCTGCACCAAATGTGTGAGAGGCAAAATACTTCAATCTGGCCTAGCTGGTATGGTGTCCAGGATGACAGCTCTGTTGGCGAGCCTTCTGGATCCCTGCCTCCAGCACCCTCATACAGTCATCTGGACGTGCCTCCTCCATATGAAGCCGTTTCAGGAACAGATGACATGAAACCTCCACCCTACAGTTTGTACGCACAAGCAGAAACCATCTCGGACTCCCAGGTGATTCCCCTTGCAGAGAGCTGTGATTCTTCCAGCATCAGTGACGCACCTCCGCCATACACTCCCAGCCCGACCAGTGATGCACCGCCGCAAGATGGAGCGGCACCAGCTTATGTGCAGGCAGACCAAAATACAGCTGCCTCGGCCTCCCGAAACTAGAACTTCAAATGTCAAGCTTCTGTGATGATGTCAAGAGccattgcactgcacatattgaAAGTGATCGGAAGGCAGTTGAGCTGTGTTGTCTTGTTTTGCAAACTCACCAGGGATGACTCTTGTCagtgccattttgttttttgattaagATGAGGAATGGATACCTTGGTTTGCGATATTCACAGAATAAAGACTGATTTCGTTTCTCAGTCGTGAAGAAAAGGGACAAGTGATTCAATGATTTAAGGAAGCAGCAtctgaaatgcagaaatgaaCTAATTTACTGTCCTTGCAGCTCTCAGAGATGTAGGTTGCTTTATCTCCTTTCTCTCAAGAAACATTAGCAGCTTGTGACTCACTGTTTCCAGGCCTTTTAACAACTttttgtgtctatgtgtgtgtattttgcttAATATAACCCACTGTGGATTGATCTGTTGTTGAAGTGACTAAGGccatatttatttcttctcccCCTGGTTTTTCCAttccattgtttttaaattttatttaatcagttatggacaagttaaataataataaaactggcCACATAAAAGGACAATGCAGGTGTTCAAGTATAAGTGAGAGAAATTTACCTGTAGTCTGTTGATTCatgtgcaaaataacaaaataacaccacacaaacaaacctgtTGGGGTAACTAATTATGCCATCCAATCTACCAATGCCgactaaaatgtaattagtgCCATTCTTAGGGGAAGATATTAGAAATTCCCAAATGtactgatttgtgtttttcaaatgtgaGAGTTTGATGTTTGGGGGGcataatcaaatataatgtgCACCTGAAATTGGACTGTTAATATGCTCCAGCGTTTTAAGGGAAATTTCttaatacttttaatgtaaaaatcaaTCTGGTTAGTTAATGTGAAATTGAACCAGTCTTATGTAAGGTTAATGCAATTAAAGGTGGTTGTGGGATCAATATACAGTTGGTTTGTGACGCtttaatatagtttttataGGCATGTTTGCATTGTACTGTGCTCTACAGCAATTCTTGttacaaatttaatttacttttgaaaCAAAGTTATGTCTTACTCAATGCACTGATCTGCTTAGTAGACTAAACTTAGGGATATTTTTGCACCACATTTCTTGGTACAAAAGTACATcatgcattttgcttttttctttggcttttatttaattttttcttcccCAAGGCCCTTAGTCTTGATCCTGCTCCATGTGTTCGATAATTCATGGGTTTCTAACAAAATGGTTTCAACATTTTTCTGCAGATTAAAGGCTAacttaaagcaacaaaaaattatacatttcattacatattttaaaaaataaatgtaaataaaattccCAAATAACTTGTATAAAACTACTTTCCAGTTTGTACACTGCATTTATTGGTTATTGTTATATCATGTACAAAAACTTAGGACAAATAAA

Function

NR:

description
uncharacterized protein LOC105921547

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019465 True 2124 mRNA 0.39 5 22270509 22284359

Neighbor

gene id symbol gene type direction distance location
AMCG00019468 NA coding upstream 21827 22226347 ~ 22248682 (+)
AMCG00019467 LOC107549185,LOC107662560 coding upstream 60053 22204665 ~ 22210456 (+)
AMCG00019471 neto1,neto1l,LOC107727239 coding upstream 85745 22172808 ~ 22184764 (+)
AMCG00019472 neto1,neto1l,LOC107727239,LOC107589957,LOC107662554 coding upstream 162181 22106161 ~ 22108328 (+)
AMCG00019463 NA coding upstream 370798 21894877 ~ 21899711 (+)
AMCG00019466 fam173b,LOC105900597,LOC106599314,LOC108440663 coding downstream 14514 22298873 ~ 22305649 (+)
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding downstream 105811 22390170 ~ 22454529 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding downstream 298401 22582760 ~ 22588134 (+)
AMCG00019478 ropn1l coding downstream 359909 22644268 ~ 22656909 (+)
AMCG00019479 NA coding downstream 386052 22670411 ~ 22688277 (+)
G34278 NA non-coding upstream 808618 21461682 ~ 21461891 (+)
G34235 NA non-coding upstream 1180093 21090144 ~ 21090416 (+)
G34204 NA non-coding upstream 1493893 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 1523538 20672987 ~ 20746971 (+)
G34183 NA non-coding upstream 1635237 20633077 ~ 20635272 (+)
G34378 NA non-coding downstream 291615 22575974 ~ 22577472 (+)
G34432 LOC107584984,LOC108256437,LOC107701635 non-coding downstream 495872 22780231 ~ 22783116 (+)
G34433 NA non-coding downstream 504649 22789008 ~ 22789463 (+)
G34435 NA non-coding downstream 515041 22799400 ~ 22799718 (+)
G34436 LOC107686039,LOC107746909 non-coding downstream 533784 22818143 ~ 22818460 (+)
G34170 rpl7 other upstream 1659620 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 2815372 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 2976301 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3249097 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 4817850 17449320 ~ 17452659 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 331264 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 901457 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 948911 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 1387766 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1761330 24045689 ~ 24086481 (+)

Expression


Co-expression Network