AMCG00019467 (LOC107549185,LOC107662560)


Basic Information

Item Value
gene id AMCG00019467
gene name LOC107549185,LOC107662560
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22204665 ~ 22210456 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019467
CCTCTTTAACCGAAAGCCTTCATCACTTCATACAGGCTAGAAAACTCCAAGTCCCAGAATACCCCGGAATTGCAGTGGCGCTGCATTTTACAAGGACTGCCGCAAATTAAATTGTTAGAAATAAAGGTCCTATCAATACGTATTATTTTTAGAACATAAAtataactttgtattttttgttacatgTGTGAAGCCCGCTGTCCTTTCATTCGTCTTCCTAACCCGTGTATTGCTTCACTGCAGTTGCGATTGCTTTAGAAAGGGCAACATGGTGTCCTCCTTCATACTTAAATGTGCGAGTGTAAAATGCCAACAAGTGCGTTTAACTCATAGCTGTATTTTTCAGTTCTTTAAACCAGCTCACACTAGTAGCATATCCTTGCAAAACAATGGGAAAACAGCGTTTAGGACTGGTTATTGCAACCTCACGGAGCCGTCTCTGATCGCTGTGCGGCCCTGCAGACCTGTCCTGCTCCTGCCCAGCAAAGGCATCTCCACCGACAGCACCCTGAGGACGGGCAACCAGGGCAAACATGGCAGGGCTGGACAGGTGTCGGTGCAGAGACGCCAGGGCGACTCTCCCAAACTTTCAGCCACTCAGAAAGttAAAGAAGCAGGAAaagattttacatatttaattgtggTACTGGTTGGGATTGGAGTAACAGgtGGACTGTTCTATGTTGTTTTCAAGGAGTTGTTTTCTTCATCTAGTCCAAGCAAAATATATGGGAAAGCTTTAGAGAAATGCAGAGCCCATCCAGAGATTATTGGAGTTTTTGGGGAGCCGATCAAGGGCTACGGTGAGATGACTCGTCGTGGCAGGAGGCAACACGTCAGTCACGTTGAATACATGAAGGATGGGTTGAAGCACATGAGGTTGAAGTTTTACATTGAGGGATCTGAACCAAGAGTACAAGGAACAGTGCATTCAGAAGTCAAAGAGAACCCGGAAACAGGAAAGTATGAATTCCGCTACATTTTTGTGGATGTCGATACATACCCAAGAAGAACAGTTGTCATTGAAGATAACAGATAAGATAAGATGAACATTGAGAAGTGGTCTAAGGCTTTGTGCTGAATAACTTCACTCGAAACaagaataaagacaaaatgtgtatattgtgaATTCCCTTCATGATTTTCCATCCAAGGATTTTATAGGCAATGGAATAACAATGAGGTGCGATTGGATGTTAAAGCAAGTTGCGTTGGattgaacattaaaataaagctgtaTATCTTTATGTCTACAATAGGTTTCGTTCAGTTGTGTccacataaacagaaaaaagacaatTGACCACATTTAATGAATGGCAGAGAGAGAATTtaatgagtaaaaaaaaaaaaaacgtaagtAATTGCAATAAATAGAGGCTTCTGCTGCCAATAATAATTTCAAGGTAATTTGCTTTGTAGACAATAAAGCTGAGAAGCATTTTCTGGaaatttacatatatttgatGTGCTCTTTGAAGAGACTAATGCCTGCTGAATTATAATGAATCTATGATGGTTAAAGCATCTTGATTGGGACTGTGCCGCATTAAAATACTGCAGTAGTCTTATGAAAAGAAACTGTTAATAATTAAGTGTTTTTGCTGCCAGTCTCTCAAAACCTGTTAACCTTTGAAATAAATGCTCAAAGCAGGTTATTAAGTTCACATACATTGGTGCTCCTGACAATGTAATGGAAATTTTCAGAAAAGTATACAAAGTTTTTATGTATAATGATGTCCCATACGACCAAGACCTTACTGTAACAAAAGCATGTTGACACTCAGATACTGATCTTTCTTAAGAAGAATGAGTGTTGATCTGTAACAGATCTCGTGGTCATCCAGGAAACAACGCAATTGTGCAATTTTGAGTGATTTATCAGTCTCTACAGCCACACCAGGAAGCTGCATTGACTCACCAGCACTGATAGAACAGCATGCTTTGTTTTACtagacaaattatttaaaaaacaagcacatttttcttccttttaattTATCACCAAATGTAATTCATGAGACATATCCAATAAAACAAAGGGTCCACACAGATACTGAATGTATTCAAAGCACTAAGTTTTAACcttgcattgttatttttctaatggGATTAGGAGGGTCCCATGGGGGATCAAGTTCGATAGCAGCATGCGTTGATATTTTGTGTGGTTTACCCATTGGTACAGATGCATTGGCCTGTAATTGAGCTCCAGAGCACACAATAAAAGTGTGATGTGTTATTAGAACAAATACTGTTATGGAAGtaactttaatattttgtttctatgtgACACATACACATTCCTGCCCTTCTCAGTTTGCTTGTTGTCATCTGGTTTCATGGCAGGAAACAGAAGAACCTAAAAAATGATGTATTACAGAACATTAGGtgttaattgtaaatgtaatcattttttatttgctgtattgAATTGTTTGATTTGTAAACACTAATTCtgttcataaaacaataaaggtATTTTTCATTGAAA

Function

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit Tim21-like

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component

KEGG:

id description
K17796 TIM21; mitochondrial import inner membrane translocase subunit TIM21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019467 True 2494 mRNA 0.38 6 22204665 22210456

Neighbor

gene id symbol gene type direction distance location
AMCG00019471 neto1,neto1l,LOC107727239 coding upstream 19901 22172808 ~ 22184764 (+)
AMCG00019472 neto1,neto1l,LOC107727239,LOC107589957,LOC107662554 coding upstream 96337 22106161 ~ 22108328 (+)
AMCG00019463 NA coding upstream 304954 21894877 ~ 21899711 (+)
AMCG00019464 NA coding upstream 310694 21890063 ~ 21893971 (+)
AMCG00019460 NA coding upstream 872894 21331262 ~ 21331771 (+)
AMCG00019468 NA coding downstream 15891 22226347 ~ 22248682 (+)
AMCG00019465 LOC105921547 coding downstream 60053 22270509 ~ 22284359 (+)
AMCG00019466 fam173b,LOC105900597,LOC106599314,LOC108440663 coding downstream 88417 22298873 ~ 22305649 (+)
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding downstream 179714 22390170 ~ 22454529 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding downstream 372304 22582760 ~ 22588134 (+)
G34278 NA non-coding upstream 742774 21461682 ~ 21461891 (+)
G34235 NA non-coding upstream 1114249 21090144 ~ 21090416 (+)
G34204 NA non-coding upstream 1428049 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 1457694 20672987 ~ 20746971 (+)
G34183 NA non-coding upstream 1569393 20633077 ~ 20635272 (+)
G34378 NA non-coding downstream 365518 22575974 ~ 22577472 (+)
G34432 LOC107584984,LOC108256437,LOC107701635 non-coding downstream 569775 22780231 ~ 22783116 (+)
G34433 NA non-coding downstream 578552 22789008 ~ 22789463 (+)
G34435 NA non-coding downstream 588944 22799400 ~ 22799718 (+)
G34436 LOC107686039,LOC107746909 non-coding downstream 607687 22818143 ~ 22818460 (+)
G34170 rpl7 other upstream 1593776 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 2749528 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 2910457 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3183253 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 4752006 17449320 ~ 17452659 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 405167 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 975360 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 1022814 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 1461669 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1835233 24045689 ~ 24086481 (+)

Expression


Co-expression Network