AMCG00019468


Basic Information

Item Value
gene id AMCG00019468
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22226347 ~ 22248682 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019468
attgtaatgtaaaatacttcaaacaataaaacagtattatcagcttgctgcctcctcccttgagacagttttgttatacagtaacccatCCCCCTTGGGCACTGCTCAAGGgctgcaaggtcgcgcgggagtcctagctcccagcaaatgaagacgaacctgcgctgacgtcacgttttatggaacaggatgtagGAAGGGACCTctttctgagtgacaagcgcaggggccaatggcagctttgatagagtgatgtttcaatcaggttcctacggcagtgtgcagaaacccctcccccttgggcagtgcttcctttttcagataactggggttgcatttgcaatctATCGATGTATACAGCTTATGAATTAGAAGTACAATGATTACTAATCACCAGAGGAAGAGAAAAGGATGTCTGATGTGTTTAACCACTAGAACTATAACTTGTTGACTTTTTGGAGATATAACTCTGCTGACTTTAATCCAGAGACATTTCCCATGTCAGGTGGTGCCCGATCAAAACAGAGGCAAAGCAGCGGTTCATCCAGAAAAGACACTCACTCACAAGAACCACCTCATTCAGCAAGAGGACAAACACAACAGAGAGATAAACCGAAGACAGAAGAATGGCCGTTTGGGAGAACCAGTAATCCCAAAGAGGACCCTTTCAGAGGCAACCAAGACAGAAGAGGATTCCAATCTCAAGACAGAAGAGGCAGCAGGACTCCGTCTCAAGGGAGTCGTCCTGGAGCCAGTGATAAACCTCAAAGAAGACAAAACCATCGTGGCCAAGGTGGACGTCATAAATCTCAAGGAAGGAATTTGGACAGTTTTCCAAATCAATACAGTGGCTCCACTGGAGATGGTCGCAAACCCTTCATAAATCACAGACCTCAGAGTATTTCAAGAAATCACAACACAAGGCAAAATGATGGCTTCAACATTGGTCAGGGACAAGGTTATCAACGGTTCTCAGGAAAAAGGGCTGAAAGTCAGCCCAACCTGTTAGACATGAATCTTGACTCATCTGACAGTGAGCAAGGTGGCAGAAGTGAGACGTTCAACAAACGAGAACAAAGACACAATGTCTGTTTAAACTACAGCGCTCTGCAAAAGATTTTGCGAATGGAACCGTCTGAAGTGGTCATGATATTGGCAGCTCCACGAAGTGGTTTGCAGGAATTTCTAAGCAAAGAAGATGCAGCTGATGAAGTCATATCTGTAGCTCTTGAAGTCCTCATTAAGGCATGCAGCAGCAGGACCAACAGGGAGAATTTACAGCATCTCCTTATAGATGTAAAAGAATCAAACTTTCTAAAGAGGATCCTCCCTATGTATGTAATGAGAGTGGGTAGACAAGGTGATCCATTACAAAGAGAGCAGAGCATTGTGAAACTTAATCAAATATTGACCCTCCACCTGACCTTAATTAGTGTGTTTCCAGCTAGCTCAGTCATTGATGTGTCTCTTATTGCAGCTCTTCTAGAGGGTGAAATAAATTACTTACGGTCAACAGGGCTCTACATTCCAGAAGAAACAGAGAACAACATAAAAAACCTTCTAAGAATCATAGCCCATCTGCAAGAGAAGAAACGTGAAGGTACACTCAAATCAGACAACTATAGATACTTAATGGGAGCTCAGGATGAACAAGGCATAGAGGACTTCAGAAATATGTCCATCTTTCCAACATATGAAGATATACATATTACTGAAAAACCATTTATGAGGCCTAACATTGTTGATAAGAAATTTGAGAACAGCAACATTTACCTTGATACTCATTTCCGTCTCCTACGAGAGGACTTTCTGAAGCCTCTGAGGGATGGCATATCTCAGATCCTCAAGTTTGATGGAAAAGACCTACACCATGGAAGATTCGATGACATTCGCATTTATTTCAACACCTTCATTCTTTCTCCCATTTGTACACCTAAAGGGATCATCTACAGAGTTCggtttgatatcaaaaattTGAAATCCGTTAACTGGGAAAACTCCAAACGACTTTTGTTTGGAGCACTCGTGTGCCTATCTAGAGATTACTTTGAAACAATGATTTTTGCCACAGTGGCCAATCGTGATGTAAAAGAGCTTGCTCATGGCATTACAACCTTGGAATTCACTGAAGAGAATCGACTAAAACTATCAGATATTTCTCCAACGGACACTTTCCTAATGGTTGAAACAACTGCATTTTTTGAAGCCTATCGTCATGTACTTGAAGGCTTACAGGAGATGGCAGCTGAAGAACTAccaatgcaaaaatatatagtcAGTTGTGATTCTGATGTCTTGCCTCCAAAGTACCTGAGAAATCATCCACATGGCTACAGCTTTGAGGCTTTGATGAATGATCGCCCTGTCAAAATACCAAACCTAGCTGAGATCAGTGATGGGAATCAGGAAGCGAGCATTCTAGATTTCAGAAACTGGCCCAGAAAGGAAAAGCTAAAGTTGGATGACTCTCAGCTGAAGGCAGTGCAGATGGCCTTAACTAAGGAGCTAGTAATCATTCAAGGTCCACCAGGAACAGgCAAGACATATGTTGGTCTAAAAATTGTCAAAGCACTTCTTGCTAACGCCCATATTTGGCGATCTGGAGTTCAAGCTCCTATTCTCGTTGTCTGCTACACAAACCATGCATTGGATCAGTTCTTGGAAGGCATCTACAAGTTTTTTAAGGACCCAACAGGACTGGTGAGAGTGGGAGGAAGAAGCACCAGTGAGATTCTGAAGACATTTTCTCTGAGTAATCTAAGAAGAGCCGATCAATTTAAAAGGAAGCTCCCAGGACACCTGCGAGCCATGTATGCAGAAcTAACAGATGAAAGGAAGGCTGAGGAACATCAGATTGGGAAAATTGGAGCTCTGTATGAAAGTTCTGTGAAGGGTGTTCTTCATGAAAGTGTCCTggaaaattacattgttttaattcatggGACTACCCTGGGGAAATTAAAGTGCACAGGAAAGAATTTCTCACACAGGAAGCAGCCATCAGTGATGATGGACTGGCTGGGAATCTCCGTGCTCAGTCATGTTTCAAGACAAATGGGTGAGTTTGAAGAACTTGATCCAGAAAGTCAGCCTGAaggtgaagaaaataataatgAAGAAACTGAAGGTGATTCAGGAAACATAATGGATGAAGAGAGGAGCTATTATCATGGTGATATTGAGAAAGCAACTGAACTTCTGCAGCTGGAAGACACTGCTGAGGATGAAGACAGTATTTGTGAGGTTGCCAGTGTGACTACAGAGGGAGTGGAGGCGGCGGCAGATCTAATCCAAGTCACAGAGGAAGCCGAACTGGTTCAAGCTGAGAGAATGATGGAGGGGGATGATGTTCAAAAGCACATCCAAAATGCACGGAGGAGGCTTGCTTCAATGCAGAACATGGTTCTTGCATATGCACCTGGTGTGGAGGAAGAACAGGAGCAGAGTCAGGAGAACTACGATGAGGGTTGGGAGATACCAAAAGACatgaagaaaaaactgaatCAGATTGTAAAGCAAGAGCTGCAGAAAACTGAACATATGTCGCTGGAAGAGGCCGAGCAAATCCATGACCTGTGGGCCCTGCCGTGTAAAGAACGCTGGCGTCTATACAGgctttgggttTCCCAATACCGAAGTGACATAAAGCTACAGATTCTGGAATGTGAGAACCGGTACCAAAGAATAGTAAACCGCATTGTGGAACTGCGAAACCGGGAGGACCTGACTGTCCTCCAAACGGCCAGTATCATTGGAATGACCACCACATGTGCAGCCCGTTACAGGAAGGTCCTGCATGATATTCAACCCAAGATTGTCATTGTTGAGGAAGCAGCTGAAGTGCTAGAAGCTCACATAGTGACTACGTTGACACCTACCTGTGAACACCTCATTCTAATTGGGGACCACCAACAGCTTCGTCCAAGCGCTACAGTGTATGAACTAGCCAAAAATTTCAACTTGGAAGTGTCCTTGTTTGAGAGGCTTATAAGAATGAATGTACCATACATTCGGCTGGACTATCAGCATCGTATGCGGCCGGAAATTGCTCGGCTGTTAACACCACACATCTATAGTAATTTGGAGAACCATCATGATGTCTATCTGTATGACAGTATCAAGggAGTTTCCACAAATGTCTTCTTTATGGAACACACGCACCTTGAAGAAAACATTCATGAAGGTCGAAGCCACCAGAACCTTCACGAGGCAAAATTTGTGAAGTCACTGTGCTACTACTTAATCTGCCAAGGTTATGAGCCTTCTAGGATAACAGTCCTGACAACATACACAGGCCAAATGTATTGCTTGAAACAAATCATGCCAAAGAGCAAATTTGAAggagtaaatgtgtgtgttgttgacAGATATCAAGGGGAGGAAAATGATATAATAATTCTTTCCTTGGTCAGGAGTAATCTGGAAGGGAAAGTAGGGTTCCTAAAAATCACAAACCGAATCTGTGTAGCTCTGTCAAGGGCAAAGAAAGGCTTGTTTTGTATTGGGAACATGTCAATGCTTTCCAGAGTTCCTCTTTGGAGCAATATCATGAACGTGTTGAGCATCAACGGGCAGATCGGGGAGATTTTAATGCTGCGCTGTGAGAACCACCCCGAAACCACTACCTTGGTGTCTGAAGAGAAAGACTTCCTCCAGGTACCTCTGGGTGGATGCTCAATCCCCTGTGAGTATCGACTGGACTGTGGCCATGTCTGCACCAGAAAATGCCATCCATTTGATTCAGAacacaagacatttaaatgcatgaagcCCTGTCCAAAAACCTTGTGCCAGGACGggcacaaatgcaaaaagaaatgctttgaggaatgtggaaaGTGTCAGGTGATGGTCACTAAAACTATGCCCAAGTGTGGCCATGGGCAGCAGGTCGCCTGTTCAGTTCCTGTAGAAATGTTTGCGTGCCAGATGCCATGTGATAAAAGCTTACCTTGTGGTCACAAGTGTATTCGGGCTTGTAGCTCCTTTTGCACTCAGAGGTGCCCACAGAGAGTGACAGTTGACCTAGAATGTGGTCACCAGGTGAATATGCAATGCTATGCGAAGCAAGAGgctgaagaaaataatatgaagaTTGATTGTTGGGTGAAATGTGGGGCACAGCTGGATTGTGGCCATGTCTGCTCTGGAAACTGCACTGTATGTTCCATTGGAAAGTCCCATATCCCATGCCAGTCCCAGTGTGAAGAACGGTTGATTTGCTCTCACCAGTGTTCAGAGGCATGTTTAGAGGCATGTGCTCCCTGCCGCAAGACTTGTGAAAACAGATGCTTTCATAGGATGTGTGACAGAAGATGCTGTGATCCGTGCCTCCCCTGTAAGCAGCCATGTGGCTGGGGCTGCAAACATCATCAGTGCACCAAGTTGTGTTTTGAGCCCTGTGATAGACCACCATGTCAAAATCCATgcatcaaaaaaaataaaaaatgtaagcatCCATGTATCGGGATGTGTGGGGAGCCATGTCCAAATAAGTGTCGTGTGTGCCACGTAAATGAGGTCCAGGAGCTGTTTTTTGGGAATGAGGCTGATCCAGGTGCCCGCTTTGTACAGCTGCTGGACTGCTCTCATATGTTTGAGGTGACTGGGTTTGACACCTGGATGATGCAGCCTGAACAGAACGGGGAGATTAAGATGAAGGCTTGCCCCAAATGCCTCACTCCCATCCGTAGAAGCGTACGGTATGGTCCTATTGTCAAACGACTACAGCTCAATATTGAGAGCATGAAAATGAAGACAGTGGAACTATGTTCAGAGCAACTGCAGAactcactgagagagagaacagaggtGGAGAGACACTTCCCACACTTTAACTTGTCTGAATTAGACCTTTCCACATTAGGTCTTCAGCAAGTTTTGTTAATCGACAAACAGGTTAGTCTTCTCTCCAAGCTGGctgaaatcaaagaaaatgctGGACTGGCCCTGCCGAACATGTTGTACAAGATTAAAGTCAACAAACAAATTGAACATTGCAGTAATATGATCTTCAGCAAAAATCATGAAATATCTGAATACAATGGAGAAATCAAAAGGATTGCGCTCTTGGCTGAGGCCTATGCATTGTCCTGCATGTCTCAAATATCTTTGTttccaaggaaaaaaaaacagctggtggagataatattaatactgaatGACAGTGTGATGAAACTTAGAGAAGGAGAAATTAAAAAGTTGCAAGACAAGCTTGACAGCATTGCGAAGAGCCAGCTGAAGATCTTGGATGAAAAGAAGAGCACAATGCTTCATTGTGACATTTTTAAGCAGAATCACTGGTTTAAGTGTAGTGAGGGGCATGTTTACTACACTCAGGGTGCTGAGACcgagaggaagagaagagaatGCCCAGACTGTTCAGTAGAGTGAGCTGAAAATATTCAATGATATCCTATGCAGGGATATGGATGAATAGAGAGAtacaaaatcttaaaatgtcaatacaaatgaagaaaacaaatgtactggTTAACATAATTAAGACTGTTATGAATGGACTTGAGCTTCCTTCTCTGGTTGATTAATTTCAGAATTCAATGTTGTGTTCAATGTTCAATGTGTTAAATCAtgtgaaacatgtttttatggCAAATACTTTACAACTATGGCTAAATATAGCACCAGCTTGTATGACTATAGTTAGGTTATAGAGTGTTTTGGAAATAGTTCAGTTAGCTTCCTTGTCAGAATCCACCATATTGAAAACAACAGCCACTctgtattattctgaattatATTGCATTAATGGAGAATAAAAAAGCCTCAATATTACAGtagttattgtttatttgaaacatgCTGTTCCTTTAATTATACATTGCTTCGTTTATTCTGCAAACATTAGTCAAAACAGTAGGAGATTCAGTTCATATATTCTTATAGCATGCTTCATGTGACATGattgtgtaataaatacatatccaataaaaaatctaatcaaa

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019468 True 6965 mRNA 0.43 17 22226347 22248682

Neighbor

gene id symbol gene type direction distance location
AMCG00019467 LOC107549185,LOC107662560 coding upstream 15891 22204665 ~ 22210456 (+)
AMCG00019471 neto1,neto1l,LOC107727239 coding upstream 41583 22172808 ~ 22184764 (+)
AMCG00019472 neto1,neto1l,LOC107727239,LOC107589957,LOC107662554 coding upstream 118019 22106161 ~ 22108328 (+)
AMCG00019463 NA coding upstream 326636 21894877 ~ 21899711 (+)
AMCG00019464 NA coding upstream 332376 21890063 ~ 21893971 (+)
AMCG00019465 LOC105921547 coding downstream 21827 22270509 ~ 22284359 (+)
AMCG00019466 fam173b,LOC105900597,LOC106599314,LOC108440663 coding downstream 50191 22298873 ~ 22305649 (+)
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding downstream 141488 22390170 ~ 22454529 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding downstream 334078 22582760 ~ 22588134 (+)
AMCG00019478 ropn1l coding downstream 395586 22644268 ~ 22656909 (+)
G34278 NA non-coding upstream 764456 21461682 ~ 21461891 (+)
G34235 NA non-coding upstream 1135931 21090144 ~ 21090416 (+)
G34204 NA non-coding upstream 1449731 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 1479376 20672987 ~ 20746971 (+)
G34183 NA non-coding upstream 1591075 20633077 ~ 20635272 (+)
G34378 NA non-coding downstream 327292 22575974 ~ 22577472 (+)
G34432 LOC107584984,LOC108256437,LOC107701635 non-coding downstream 531549 22780231 ~ 22783116 (+)
G34433 NA non-coding downstream 540326 22789008 ~ 22789463 (+)
G34435 NA non-coding downstream 550718 22799400 ~ 22799718 (+)
G34436 LOC107686039,LOC107746909 non-coding downstream 569461 22818143 ~ 22818460 (+)
G34170 rpl7 other upstream 1615458 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 2771210 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 2932139 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3204935 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 4773688 17449320 ~ 17452659 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 366941 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 937134 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 984588 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 1423443 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1797007 24045689 ~ 24086481 (+)

Expression


Co-expression Network