AMCG00019471 (neto1,neto1l,LOC107727239)


Basic Information

Item Value
gene id AMCG00019471
gene name neto1,neto1l,LOC107727239
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22172808 ~ 22184764 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019471
ATCCGGACTTTAAAGACCTTGGTGCCCTGAAACCACTGCCCTTTTGTGAATTTGAAATGGGAGGACCTGAAGGTATTGTTGAATCTCAGCAAATCACCAAAGAAGGTAAAGCCTTAGAAACAGAGGCAGTGGACTGCAAATGGTATATCCGAGCTCCACCGCGGTCCAAGATCTACTTGCGATTCCTAGACTACGAGATGCAGAACTCTAACGAGTGCAAACGCAATTTTGTGGCCGTGTACGATGGGAGCAGCTCGGTGGAAGACCTGAAAGCCAAATTCTGCAGCACAGTGGCTAATGATGTGATGCTGGTTACAGGGCTGGGGGTGATCCGTATGTGGGCTGACGAGGGCAGCCGCAACAGTCGATTCCAGATGCTTTTCACATCTTTTCAAGAGCCTCCCTGTGAAGCAGACACATTCTTTTGTCACAGTAACATGTGCATCAATAACACCTTGGTATGCAATGGGGTTCAGAATTGTGTCTACCCATGGGATGAAAACCATTGCAAAGaaaaaagaaaagctaacCTGTTGGACAACCTCACCAACACCAGTGGAACAATAATTGGGGTTACCTCTTGCATTGTGATTATCCTTCTTATTGTGTCTGTTATAGTTCAAATTAAACAGCCAcgcaaaaaatacattgtacgGAAAGAAGATTTTGACCAAACAGTATTTCAGGAGGTGTTTGAGCCCCCCCACTATGAACTCTGCACTCTCAGAAGCACGGCAGCATCTGCTGATTTGGTGGACCTTGCTGAGGACTTTGAGAACTACCATAAACTGAGACGGTCTTCATCGAAATGCATTCATGACCATCACTGTGGATCTCAGATGTCCAGCACCAAGGGTAGCCGCAGTAACCTCAGTACTCGAGATGCTACTATCTTAACAGATATACAGCCCCAACCCGTACGGCCACTAATCCCCCCCACCAACAGGAGGAGCATACTGGTGATGAAGCACAGCTATTCACAAGATGCAGCAGATGGATGTGATCTAGATGAAATTGAAGAGGTGCCCACAACAAGCCACAGGCTGTCCAGACATGATAAAGCAGTCCAG

Function

symbol description
neto1 Predicted to act upstream of or within regulation of neuronal synaptic plasticity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NETO1 (neuropilin and tolloid like 1).
neto1l Predicted to act upstream of or within regulation of neuronal synaptic plasticity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NETO1 (neuropilin and tolloid like 1).

NR:

description
PREDICTED: neuropilin and tolloid-like protein 1

GO: NA

KEGG:

id description
K24360 NETO; neuropilin and tolloid-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019471 True 1070 mRNA 0.47 5 22172808 22184764

Neighbor

gene id symbol gene type direction distance location
AMCG00019472 neto1,neto1l,LOC107727239,LOC107589957,LOC107662554 coding upstream 64480 22106161 ~ 22108328 (+)
AMCG00019463 NA coding upstream 273097 21894877 ~ 21899711 (+)
AMCG00019464 NA coding upstream 278837 21890063 ~ 21893971 (+)
AMCG00019460 NA coding upstream 841037 21331262 ~ 21331771 (+)
AMCG00019459 dok6,LOC107741641 coding upstream 963127 21200863 ~ 21209681 (+)
AMCG00019467 LOC107549185,LOC107662560 coding downstream 19901 22204665 ~ 22210456 (+)
AMCG00019468 NA coding downstream 41583 22226347 ~ 22248682 (+)
AMCG00019465 LOC105921547 coding downstream 85745 22270509 ~ 22284359 (+)
AMCG00019466 fam173b,LOC105900597,LOC106599314,LOC108440663 coding downstream 114109 22298873 ~ 22305649 (+)
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding downstream 205406 22390170 ~ 22454529 (+)
G34278 NA non-coding upstream 710917 21461682 ~ 21461891 (+)
G34235 NA non-coding upstream 1082392 21090144 ~ 21090416 (+)
G34204 NA non-coding upstream 1396192 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 1425837 20672987 ~ 20746971 (+)
G34183 NA non-coding upstream 1537536 20633077 ~ 20635272 (+)
G34378 NA non-coding downstream 391210 22575974 ~ 22577472 (+)
G34432 LOC107584984,LOC108256437,LOC107701635 non-coding downstream 595467 22780231 ~ 22783116 (+)
G34433 NA non-coding downstream 604244 22789008 ~ 22789463 (+)
G34435 NA non-coding downstream 614636 22799400 ~ 22799718 (+)
G34436 LOC107686039,LOC107746909 non-coding downstream 633379 22818143 ~ 22818460 (+)
G34170 rpl7 other upstream 1561919 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 2717671 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 2878600 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3151396 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 4720149 17449320 ~ 17452659 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 430859 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 1001052 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 1048506 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 1487361 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1860925 24045689 ~ 24086481 (+)

Expression


Co-expression Network