AMCG00019475 (march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575)


Basic Information

Item Value
gene id AMCG00019475
gene name march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22615623 ~ 22643226 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019475
ATGGACACCGCCGAGGAAGCTGATATCTGCAGGGTGTGCCGGTCAGAAGGAACTCCAGACAAGCCGCTCTATCACCCCTGTGTTTGCACTGGCAGTATTAAATTCATCCACCAGGAATGCTTGGTTCAATGGCTAAAACACAGCAGGAAAGAGTACTGCGAATTATGCAAGCATAGGTTTGCTTTCACGCCAAtttattctcCAGATATGCCTTCAAGGCTCCCCATTCAGGATATATTTGCAGGACTAGTGACGAGTATTGGCACAGCAATACGATACTGGTTTCATTACACACTTGTGGCCTTTGCCTGGTTGGGAAGAGTAGAAATCGTCTTCAGCAGCGGCATCCTCCTCATCGTCATTGTCCACTTCCATCTCCTCGGCTGGGTCCACCTGGATGTCGGGTATCTCTGCCACCACAGCATTCTCAGCAGGAGGGTTGGCTGGCACTGGCGCCGGCACGTTCTCAGCAGCCCCATTCCCAGCACCCGCAGCCTGGACACGCACAGCAAGGGACAACATACTTACACATCCTCTCTTACGACAGCAGACTCTTCGCAGCACTCACTGCTCCTTAACTACATTCCTCAGGGGCTGGCAGCCCTGGTGAAATTCCAAAGATCCCGCCGCTTGTTAGGGGTGTGCTATATTGTTGTAAAGGAAATGTTTGATGCTTCTCTGAAAGACCGGGAACTGAGTTTTCAGTCGGCCCCGGGCACGACGATGTTTCTTCACTGGCTCGTGGGCATGGTGTACGTCTTCTACTTTGCATCTTTTATTCTCTTGCTGCGAGAGGTTCTGAGACCTGGTGTCTTGTGGTTTCTGAGAAACCTGAATGATCCCGATTTTAATCCTGTCCAAGAAATGATTCATCTGCCTATATACAGACATCTCAgaagatttattttatcagtgGTCGTATTTGGGTCCATTGTCCTTCTAATGCTTTGGCTTCCCATCAGGataatcaaacacattttaccATATTTCCTTCCCTATAATGTAATGCTGTACAGTGACGCCCCTGTGAGTGAGCTGTCTCTGGAGCTGCTGCTATTACAGGTGGTGCTGCCTGCTCTCCTGGAACAAGGACACACCAGGCAGTGGTTGAAAGGACTGGTCCGGGCCTGGACTGTCACGGCTGGCTATCTGCTAGACCTTCACTCTTACCTGCTGGGGGACCAGGAGGAAAATGACAACAATGCCAACCAGCAGGCCAACAACAACCAGCAAGCTCGCAATAACAACGCCATCCctgtggtgggggaggggctGCACGCTGCGCACCAGGCCATACTGCAGCAGGGAGGACCGGTGGGCTTCCAGCCATACCACAGGCCTCTTAGGTTCCCCTTCAGGattGTGCTGCTAATAGTGTTCATGTGTGCAACATTGCTGGTAGCCAGTCTTATTTGCCTCACATTACCAGTATTCACTGGCCGCTGGTTAATGTCCTTTTGGACCGGGAGTGCCAAGATCCACGAGCTGTACACCGCAGCCTGTGGCCTGTACGTGTGTTGGCTGTCCATTCGAGCCATCACTGTGCTCCTGGCCTGGATGCCCCAGGGTCGGCGGGTTATTCTGCTCAAAGTCCAGGAGTGGTCTCTCATGATCATGAAGACTCTGATTGTGGCCATCCTGTTGGCTGGAGTGATCCCCTTGCTGCTGGGCCTCTTGTTTGAGCTGGTCATCGTGGCTCCTCTGAGGGTCCCTCTGGACCAGACGCCTCTCTTCTACCCGTGGCAGGACTGGGCTCTTGGAGTGCTCCATGCCAAAATCATCGCTGCCATAACCCTGATGGGTCCCCAGTGGTGGCTGAAGACCGTTATTGAGCAGGTGTACGCAAATGGAATCCGCAACATTGACCTTCATTTTATAATCCGCAAGCTGGCAGCTCCAGTCATTTCAGTTTTACTGCTCTCGCTCTGTGTGCCCTATGTCATAGCTGTCGGCATTGTACCTGTAATAGGGGTGGCAGCTGAGATGCAGAACCTGGTCCAGCGCCGGATTTATCCTTTTCTCCTGATGGTGGTGATGCTCATGGGAATCCTCTCCTTCCAGATCCGCCAATTCAAGCGCCTTTATGAACACATCAAGAACGACAAATACCTTGTTGGCCAGAGACTTGTAAACTACGAACGCAAGGCGGCGGGCAAAGCCAGCTCGGCACCACCCACCAGCTCTCCTCAAGAGTAGAGGCAACTCTGTGAGGTGTCAGTTGCACTCTGACCTCCTGGCATTTGGACTCTTATTCACAGTCCTCAGTTGGCTTCCTTCTGTTCTGTGCTGATGTTTCTATTGCTTCACATCCAAGTTTCAGGCATCCTCCTTCCTTGTCTTATCTTGCCCTGCTTGTAAGTGCTGCCTGAGAACTGTACATGTGTAAATAGATGAAAAATAACCcttaaacaaaggaaaaaaaaaacctggatTAAAGAATGTGCATTGTAcatcttaaaacaaatgtatattaatttattaaatctaGTTGTCACTTTATTTTGTGGACTCCTGTTGTTCTCTCGGAAAGAGACACGGTGTGACTAACGAAATTGCTGAGGAAGCACGACTTTACACTTTCTTTAGATCGTCTTTAACCATCGAAGGAACCTTCCTTTCTTTTTGAAGTactaaatgaaaaagaagatcCAATACCTAGTGAATATGTCTGCCTTTCTATCAAAGATTGGGTGGGAGTTTTAGTTCTTGTATTTTTAAGGGGAAAtgtctgttcttttttcttttcatattaaaGTTTTTAAGTCACAACTGAGACAATCAAAGTCAATGTACAGGTATGTCTCGATGTGTAGGAGCATATGAAACAGTATTAACtgtattaagtattattattattattatttttttaacggTGAACCGATCCTTCATACAAAGAACCTCTTTATTTATGTGCAGGTACATTCTCCAAAACATATTAATGAATACACTATAATGCATATGAAACGCTTCAACACTGACATACCACAAGGCACACTTGAattatccttttattttattttaagcctaTCTTTAGATGTTCTTTTTAGCCTGCATTGAATAATAAAGCAATCTGAAATAATGGCAACATCCGCAATAGTGTAgcaatagttaaataaagtgttacataaatatatatatttttgaagttAGGTCCATTTATGATGCAAGACCATTTGGATGTGCATCTTCAACTATATGataaatgtttgtgtataaaATCCCGTTTGTGGTATGTATGGTCTTATCACGGCATGATTCTTAGTGTCAAACTGGTTTTACAACATGGTCTATCTTTTGCCTTTGCTGTTATTTAATGACATTCATGGTTTACATAGTTTGTGTAATGAATCAATTACTGACAATTCTAAGGAAGCAAAAACTACATTGTCCATCCATTTTAATGATTGATGGATTAATTCTTaggggtttttgtttgtttgtttgatttgtttttaatggtacTTTGCTTCAGTCTTTAACATAGACCAGTATGGATTAATAACCATTAGTTGCACAAGATAAAAAAAGTTATGGGTTCTGGTTGATGGAACCCCTAAAACCTCATGGGGAAAATAGAAACGTGGTATTTTGTgagtttaaataattttgtgcaCACAACAGATCTCTTGAGCAATAGATAGTAAGCAGGGTAACAATACATTAGCTGCTAACTGGATCTATACTGCTGGGGGTCCCTGAACAACCCGAATTTAGATTTAActattcaaattaaagattattaCATTGTATGAAGGTGCTGTCACTTGTTTACCTAAGGTTGACTTTATTAACTACATATAATCATATAACTATAGCGTTACTGctgtgtgaaatgtaaatgcatgtcCTTGCTTTAGCAAATGGAACAATGGCATTTACAAAACTTCCTAAATATCCTATATTGTACTGGTATATAGGcctttttaattagtattatataaattaattgttgaCAAGCAAAGATCTGGTAATTAAGTTGACCTTCCTTTACATTTTGAGAGAAACCCTGTatggttttgaaatattttaaaggaataCATGTGGATACTGTAATACTCTGAAAAGCCTTTAAATGTGAAGTGAAGTTGGGTAGGTGCTATTGTCCATGATCTTTACTGCAGCTAGAAACATCTTGTAAACCAAAAGGTACTATCTAATGCTCAATAGAtaattcacacacatacacccccaTGTCACATGTGATGTTctataattaaattgtaattgccAATTTTAAAACCTTCCCATTAACCAAAGTGATCAACACCATTAGATTAAAGGGAATGGAAGTATAGATTGCAGTATAGGAGTGCATCAGATGTGATGAATAAATGTTGTTTCATGCTGCATCCTAGTCTTAGATTATATGGCAATGATCATGATTTGATTTTCTCAATCACATTTCTAAggacaaaaaaattgaaagcttATGGTGGAtgctgtaaatatgtattttcaggaATTCTAGAATTAAGGCTGATCTGTGTTAATATGATTCATGTTTTAAAGCATCAAAGGATTTCCTTCAATGCATAGGTTATGCAAGTGACCTTACATGTACAATACAGTGAAGCAGTGATACTTTTTGCTTttagggttttgttttaatgttagcTCCCTTCcctgcaaaatgtttttatttttatatgtataatgaAAGGTGCATGGCTGTAAAGTTTTATGGAAAAAAGTCTTAACACAATGCAGGACATGTAATGATGTGGTCAGCTTTTTTGGTAATTTGCTTACTTGGATTGCTTTTCTgaacaaaataattgctttaGCATTGCTGTCTTCCCTCTGATAAGCATGCTCGAAAAAGCAGAGAAATAATTACTATCAACTTGAACATACAAGTGTCAGGTTCTGAATcttaaacaagcaaaaaaaatgtttaagaattatagcattgttattttaaattgtaaatttccACCCCCAGCATGTTTGTGTGAGTATTAATTGGGAATGTATAAACTGCACAGCTGGGGGTTCGTTGACCACTTAGatgtaaatgttaataatacaaaacaaaacaaaacaaaaacatttttacatttataacctgtattaaataataatggataagatgtgtgctttctgttttcatttttgtaggGCAGTGGAATTTCATTCCTGTACTGTGCAGTTCTCTCCTGTAGGCACTTGCTCATAGTTTATACTGTTTCCAGTCAAAGTGTTGTATTTCAACTACAGGGTGTCCGATAAGTCTGGAATCAtaggggaaaataaattaatatttgtcttATATTCATCATTCACCGTGTGATTCCTGACTGGCCATCTCATTTGAATTTGTGTATCGGGATTGATGGTGGACACACTGAGCACGTTCTGTGAATAAAGGCATTTGTATTGccatttttataatgttttctaTGATTCCAGACTTGTGGCACACCCTGCACACACAAATcttatgatttttgtttaaattgcatttgccTGCTGATGAAGAACAGCTGGCTACTGTACTAGGCCTACACACTTAATACTTTTTTACTGCACCATCTGAAGAAAGGTGAGGAAATTACTTATAACTGAGAAATTCTGatagaaatgcatttgtttaactgtaaatcaaatacaattgtgtCAGTTTTTGAGTGGTTTAAATTACTTTACAAGTTTTTCTTGTGAGTTACTGTAACTTATTTTTACGGAAgttaaattatgcattaatcATGACATTAGCAACAAGTAATTACAATTTTTGGGTGTAATACTTGTCTGATTTTgctaagtttatttttttgtgtgagaGTAAGTAAATAaaggttatttgtttttaagctttGGTCTTTCTGTTGCATGAATTGTGGATTGCTTATGTAGCCAGTAACTAATTTTCCACATAAAACCCTGATTTATCTGACCAGGTAAACATTTTAGCACACAAATGGCATGCAGCATTGgtacacttttaaaaacatttatgctGTGCATATTTTACTTCGGCATGTAAGTGTGCAAATGCTAATAAATGGTAGGGGGTGGAATGATGTCCTCATTTTTTGGAGTAAGAGGAGATTGCAATTTTATTCCAAACTTCTCTTTAACAGTGTCTGGGATCTCCTCGTCTGACAGCTCCATGGTGGTCTTTATCACGTCTCCTCCACCGTCAGATGAATACCGGGTGATTATTAGTTTGCGGCCTATATAAGTAATCCTCCCATTGGGCATGAGAAGAGAACAGAGTGACTTGCAGTAGAAAAGCGAACTGGGGGAGGTCTGATGGTAATGACACATTGCCTTGAATTCCTCCAGGTGACGTGGTTGAAGAGTGAATTTATACAGCTGCAACCAGCCAACCTGTTGCTCTTCTTTCATCAGCTCCTCTTGGTGTCCatattctgttttctgtccCCTCCCATTTTCTTGTCCTTGCCCTTTCATAACAGTCTCCAGGAAAATGGTTTCTCCCTGATGCCGGAGTTGAAACACGCCGTTTCCCTGCTTCAGAGGCCCGTGAGTCTCCAGTGACAATGGAAGCTGGAAGCCTTCTCCAAAGCCTACGTCACAGAGCCATCTCTGCCCCTCTAGGGCCACCAGG
>TU43058
gatttttttttatgatcttTCTGGAGGGGGGAATGGTTACAGTTCAAAATGTTTCGTGTTGAATAAACAGGATTTTGCCCCACTCACGGGGGGAATCGCACAGAAACAGGATCAGAGCGCCTCCAACAAGAGCTGAAAGAAAGTAGTGGGGTGCCAACCGTGCGCAAATCCGAgcttaaatgtgcattttcttcTGAAGCTATTTTGATATCCAGGCTCCCTGACGGTGTGTTGATGTGTTGACTGTAAAGTGTAAGCGAGGGCAGTGCGTCAGCATACAAGATGGACACCGCCGAGGAAGCTGATATCTGCAGGGTGTGCCGGTCAGAAGGAACTCCAGACAAGCCGCTCTATCACCCCTGTGTTTGCACTGGCAGTATTAAATTCATCCACCAGGAATGCTTGGTTCAATGGCTAAAACACAGCAGGAAAGAGTACTGCGAATTATGCAAGCATAGGTTTGCTTTCACGCCAAtttattctcCAGATATGCCTTCAAGGCTCCCCATTCAGGATATATTTGCAGGACTAGTGACGAGTATTGGCACAGCAATACGATACTGGTTTCATTACACACTTGTGGCCTTTGCCTGGTTGGGAGTTGTTCCCCTCACAGCATGTAagtaatacagttttgtttgtctgGGTTTAACCTAACCCTCATAATacgaacataagaaagtttacaaacgagaggaggccattcgccccttCATG

Function

symbol description
march6 Predicted to enable zinc ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6).

NR:

description
E3 ubiquitin-protein ligase MARCH6

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019475 True 6574 mRNA 0.41 19 22615905 22643226
TU43058 False 717 TUCP 0.46 4 22615623 22625205

Neighbor

gene id symbol gene type direction distance location
AMCG00019470 cct5,LOC107686714,LOC107695377 coding upstream 27489 22582760 ~ 22588134 (+)
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding upstream 161094 22390170 ~ 22454529 (+)
AMCG00019466 fam173b,LOC105900597,LOC106599314,LOC108440663 coding upstream 309974 22298873 ~ 22305649 (+)
AMCG00019465 LOC105921547 coding upstream 331264 22270509 ~ 22284359 (+)
AMCG00019468 NA coding upstream 366941 22226347 ~ 22248682 (+)
AMCG00019478 ropn1l coding downstream 1042 22644268 ~ 22656909 (+)
AMCG00019479 NA coding downstream 27185 22670411 ~ 22688277 (+)
AMCG00019477 NA coding downstream 50466 22693692 ~ 22702036 (+)
AMCG00019488 NA coding downstream 923355 23566581 ~ 23575527 (+)
AMCG00019494 NA coding downstream 1452069 24095295 ~ 24102633 (+)
G34378 NA non-coding upstream 38151 22575974 ~ 22577472 (+)
G34278 NA non-coding upstream 1153732 21461682 ~ 21461891 (+)
G34235 NA non-coding upstream 1525207 21090144 ~ 21090416 (+)
G34204 NA non-coding upstream 1839007 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 1868652 20672987 ~ 20746971 (+)
G34432 LOC107584984,LOC108256437,LOC107701635 non-coding downstream 137005 22780231 ~ 22783116 (+)
G34433 NA non-coding downstream 145782 22789008 ~ 22789463 (+)
G34435 NA non-coding downstream 156174 22799400 ~ 22799718 (+)
G34436 LOC107686039,LOC107746909 non-coding downstream 174917 22818143 ~ 22818460 (+)
G34438 NA non-coding downstream 237954 22881180 ~ 22888739 (+)
G34170 rpl7 other upstream 2004734 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 3160486 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 3321415 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3594211 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 5162964 17449320 ~ 17452659 (+)
AMCG00019481 NA other downstream 542590 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 590044 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 1028899 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1402463 24045689 ~ 24086481 (+)
AMCG00019496 NA other downstream 1572651 24215877 ~ 24219991 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location