AMCG00019477


Basic Information

Item Value
gene id AMCG00019477
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22693692 ~ 22702036 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019477
aCTGGATTGATAGTAGCCTGTTACCAAGGCTTTGTGGACATCGTCATTGCACTCGCTCAGTGTCCTTATATTGATGTCAACTGGCAAGACAGCGAAGGGAACACAGCCCTCATAACTGCGGCGCAGGCAGGACACATAACAATCTCCAACTACCTGCTCAACTACTACCCAGGCCTTGACATCGAGAGGAAGAATGTGCATGGTTTCACTGCTCTGATGAAAGCAGCTATGCAGGGGAGAACTGAATGTGTCCGTACTCTCATGCTGGCAGGGGGAGATTTAGCAGCAACTGATAATGGGCGGAAGCTAACCCCTCGGCAGTGGGCCCTTTTCACAGGCCGCTACGAAACCGCGTACCTGATAATGCAGCTGACAGCCCGTCCCTGTGCCGAGCAGTTCTGCGATTCCTACAAGCCAGAGTGGCCCCGGCTAAAAGACCTAGTGGCTAAAGCCAATGAGCCCAAGGGTTGCCTGCAGAAGATCTCAGAGACTGTGTGTTCCCTGTTCAGCTTCAATTTTCCCCGTGACCCGGAAGAAGATGGCGTGATGGACCACATGGTACGGATGACTACCAGCTTGAGCAGCCCGTTCATTGCCACTGGCTGCCAGACCGTGTGCCCTGACAGCCCCCCTTGTGTGGGCAAGAGGCGGTACGCCGTGCAGGAGATTCTCCGGAGGCAGCGTGTGGAGCAGCTGAAAAACCACCCAGAGCGCCTCAACAACTACAAGAAGCTCTTCCAGAACTCACGGGTCACTCTGGTCTCCAAAAAGCAAGAAAGGAGGGCTAGCCTGCAGCCCAACAGCCTGACGACGAGTTCCTCCAATGTGCCCACGCGGCGCACCAGCCTACTGCCACTGCACCTTCTGCGGAGAAGCAGCGTGCGGCCTGGCATGGTGGTGCCCAAAGTCAGGGTGTCCAAAGCGCCTGTTGCCACCTACGAGCCGGAGAGGGTGCGCAGGAGGAGCAGCTCCAAGGACAATCAGTTCCTGCAGATCCCCAAATGGAGATACAAGGAGCtgaaagaggaaagaaagaaggcagaggaagaggagaggagaagagccGAAGAAGTGACTCGGAAACATTTGGCCTCAGGGAAGAAGAAGGCATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019477 True 1113 mRNA 0.55 3 22693692 22702036

Neighbor

gene id symbol gene type direction distance location
AMCG00019479 NA coding upstream 5415 22670411 ~ 22688277 (+)
AMCG00019478 ropn1l coding upstream 36783 22644268 ~ 22656909 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding upstream 105558 22582760 ~ 22588134 (+)
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding upstream 239163 22390170 ~ 22454529 (+)
AMCG00019466 fam173b,LOC105900597,LOC106599314,LOC108440663 coding upstream 388043 22298873 ~ 22305649 (+)
AMCG00019488 NA coding downstream 864545 23566581 ~ 23575527 (+)
AMCG00019494 NA coding downstream 1393259 24095295 ~ 24102633 (+)
AMCG00019493 NA coding downstream 1406926 24108962 ~ 24149017 (+)
AMCG00019495 NA coding downstream 1451461 24153497 ~ 24178723 (+)
AMCG00019499 NA coding downstream 1478159 24180195 ~ 24182210 (+)
G34378 NA non-coding upstream 116220 22575974 ~ 22577472 (+)
G34278 NA non-coding upstream 1231801 21461682 ~ 21461891 (+)
G34235 NA non-coding upstream 1603276 21090144 ~ 21090416 (+)
G34204 NA non-coding upstream 1917076 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 1946721 20672987 ~ 20746971 (+)
G34432 LOC107584984,LOC108256437,LOC107701635 non-coding downstream 78195 22780231 ~ 22783116 (+)
G34433 NA non-coding downstream 86972 22789008 ~ 22789463 (+)
G34435 NA non-coding downstream 97364 22799400 ~ 22799718 (+)
G34436 LOC107686039,LOC107746909 non-coding downstream 116107 22818143 ~ 22818460 (+)
G34438 NA non-coding downstream 179144 22881180 ~ 22888739 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other upstream 50466 22615623 ~ 22643226 (+)
G34170 rpl7 other upstream 2082803 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 3238555 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 3399484 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3672280 19005024 ~ 19021412 (+)
AMCG00019481 NA other downstream 483780 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 531234 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 970089 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1343653 24045689 ~ 24086481 (+)
AMCG00019496 NA other downstream 1513841 24215877 ~ 24219991 (+)

Expression


Co-expression Network