AMCG00019478 (ropn1l)


Basic Information

Item Value
gene id AMCG00019478
gene name ropn1l
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22644268 ~ 22656909 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019478
TCACATGACAGACGGGCTCGGGGTTGCTTAGCAGCGCGCAGTAACAGCAGTTTttcaacagacagacagacagacagacagacttacTGACTGCGCTTTTACATCTCCTGCCCAGCTGTTTAACCGGAGAAGACACCCAcagACAGGAGCCATGCCCCCTCCGGACACTATGTTCTGTTCCCAGCAGATCAACATCCCCCCCGAGCTGCCGGACATCCTGAAGCAGTTCACTAAAGCTGCGATCCGGACTCAGCCGCAGGACGTGCTCCAGTGGTCGGCGGCGTATTTTTGTGCATTAGCAAGAGGGGATACTCTCCCTGTCAAAGAAAGACTGGAGATGCCAGTAGCAACACAGAAGACAGACACAGGGCTTACTCCTGGCCTTGTGAAGATCCTTCATAAACAGACCATCCTGAGCGCCATGAAGCACGCGTGTGAAATCCTCACGGAGGACCCGGAGGGAGGAGCGGCTCGTATTCCTTTTGACACGTTTGTGTTCCTCTATACCTACCTGGTGCAGCTAGATGGGGAGATCCCACAGGCGCAGATTGACAGCTTCCTGCGCAGCCTGGAGGAGCCTGTGAATCGTCAAGAAGGGATGGTGCAGCCATCTAACTTTGCCAATCTGGACGGTCTTGAAACGAGTGACTGAAGCAAATACAGTTTCACATGATACAATGTTGCGACCAGTTTTGTGGCTTCTCATTTCCATGTGACATCCCGTGAaccaaactgaaacaaatatggATCTTTGCTGAGGATATTGATGTGGACAATTATATAAGTGACAACATAGAATAATGGAAACAAGCTGTGCGGGAGGACATTATTTGTCACATAATAGGCTTCAGAAGTGTATCGATAAACAGCAGTGTTTGGAAATGCACAACTGCATTTTGGATCAGGAATACAGTACAAAACTAAcgccatttaaaataaataaaaaaacaagaacggTCTTTGGTAAAAATGggtaaagggaaaaaaaaaaaatccaaaagcaAACATGAAGTATGTTtatcatgtatatttatataacgtatatatttttaaatgaaactgaacttataatttcaaataaaagacTTCTATTTAGTTTGAGAGTggaagtttttttatttgtgcgAGGCTTTTTGATCTTTACAAATACGACAGGCAGAGAGACTTTGCACAAGACCGATAGATAAAATGGTaattccttaaaaataatatacaataagcATGCAAAGAACGAATGATTGGAACACTGACAGTTTTGAtaaaggattttaaattgtaaaaatgaaCTTGAAGACCAGAATTAGATGTTCTATATCAAAG

Function

symbol description
ropn1l Acts upstream of or within spermatid development. Predicted to be located in cilium. Predicted to be active in cytoplasm and motile cilium. Is expressed in testis. Orthologous to human ROPN1L (rhophilin associated tail protein 1 like).

NR:

description
ropporin-1-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019478 True 1320 mRNA 0.43 5 22644268 22656909

Neighbor

gene id symbol gene type direction distance location
AMCG00019470 cct5,LOC107686714,LOC107695377 coding upstream 56134 22582760 ~ 22588134 (+)
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding upstream 189739 22390170 ~ 22454529 (+)
AMCG00019466 fam173b,LOC105900597,LOC106599314,LOC108440663 coding upstream 338619 22298873 ~ 22305649 (+)
AMCG00019465 LOC105921547 coding upstream 359909 22270509 ~ 22284359 (+)
AMCG00019468 NA coding upstream 395586 22226347 ~ 22248682 (+)
AMCG00019479 NA coding downstream 13502 22670411 ~ 22688277 (+)
AMCG00019477 NA coding downstream 36783 22693692 ~ 22702036 (+)
AMCG00019488 NA coding downstream 909672 23566581 ~ 23575527 (+)
AMCG00019494 NA coding downstream 1438386 24095295 ~ 24102633 (+)
AMCG00019493 NA coding downstream 1452053 24108962 ~ 24149017 (+)
G34378 NA non-coding upstream 66796 22575974 ~ 22577472 (+)
G34278 NA non-coding upstream 1182377 21461682 ~ 21461891 (+)
G34235 NA non-coding upstream 1553852 21090144 ~ 21090416 (+)
G34204 NA non-coding upstream 1867652 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 1897297 20672987 ~ 20746971 (+)
G34432 LOC107584984,LOC108256437,LOC107701635 non-coding downstream 123322 22780231 ~ 22783116 (+)
G34433 NA non-coding downstream 132099 22789008 ~ 22789463 (+)
G34435 NA non-coding downstream 142491 22799400 ~ 22799718 (+)
G34436 LOC107686039,LOC107746909 non-coding downstream 161234 22818143 ~ 22818460 (+)
G34438 NA non-coding downstream 224271 22881180 ~ 22888739 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other upstream 1042 22615623 ~ 22643226 (+)
G34170 rpl7 other upstream 2033379 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 3189131 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 3350060 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3622856 19005024 ~ 19021412 (+)
AMCG00019481 NA other downstream 528907 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 576361 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 1015216 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1388780 24045689 ~ 24086481 (+)
AMCG00019496 NA other downstream 1558968 24215877 ~ 24219991 (+)

Expression


Co-expression Network