AMCG00019492


Basic Information

Item Value
gene id AMCG00019492
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24045689 ~ 24086481 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019492
ATGGGACTGGGGTATGAGGCCCTTTTCCCTCTCGTGCTGTCGTGGCTGATGTTTGTGTGGATTAACATTGAGCAGGAGACTATACAATTTAAGGGCACATCTACCAGACTAAAGCTCTCCAATATTGACTTCTCTGAGAACATTGACATATCAAAGATCAGGCAACTGAAGCTAGACGATATACGAAGATCTTACTTTTTTGAGCTGTGCAGCAGTTTTGACTCTTATCATGTCAGCTTGGTTTGTATGGAAGTCCAAAAGCAAAGCACCTCAGCGCTGGAGAGCTTCTCAGCTATGCTGCATCTGACCTTATGTGCCTATGTGCTGAACAATACCCATTCCAGTCTACGTCTAAAGCAGGGCTTGCCTATTTTCAATCAGCTCGTTAGCTGGACAACACTAGGCATTAGGGGGAATGTGGCCAGGAACAAACACCCAAAGATCCAGCTGAAGGACATCatctacaaaacacaaaaacataggAACTTGCTTTATTCAACAGCTGTTACAATggtaagtgtgtgtgtagacaTGATCCCCACTGGCCCCtga
>TU43246
gatcaaatacttttNNNNNNNNNNNNatatatatatatatattttgtttaacagGTATGAGGCCCTTTTCCCTCTCGTGCTGTCGTGGCTGATGTTTGTGTGGATTAACATTGAGCAGGAGACTATACAATTTAAGGGCACATCTACCAGACTAAAGCTCTCCAATATTGACTTCTCTGAGAACATTGACATATCAAAGATCAGGCAACTGAAGCTAGACGATATACGAAGATCTTACTTTTTTGTATCCTTTTGTGCTTGTTCTTCATGAATTCTTGCTTTATGAATATAAACCAACAGATGGTGCTCTGTACACCTCATTTGAAAATTGTCTACCATGctgaaaaaagttaaacaaaaagcaaatctGTAAACTGCTCAGCTGCTATTTACATTTGCCATCCATTCATCTTTTTTAATCTTACTGAATCCATTCAATATAAGCTTAAATTTCCCTGATGTTACATTTTTGAAGACCACTGGAACTTTCTgaatagattattatttatttgtaaagaaaaacatttaatatagaCAATGTCTAGCTAATCTGAACCAGGTGAATCAATGTAGAATGTGTTGTGATATGGATAGTTGCCTCCCTTCCCTTCTCTGGAAACCTGATATTGAGGCAGCAAGTGCAGACAGGTGGTTTGAAACATGCAATGAGGAAAAACCTGAAGCAATCAGTGCTGGATATGTTTTGGGAGAGAAAGCTCATGTGATTCTGTTTAGcatgtgttttctttccttctccttAAATGGTTTCTTTTACCATAGAGTGCAGTATTTAAACACCTAGATATGAACACTGCATACTATcaacattcaattaatttagtgtctcaaacatatacatacacacatatatactgtgACAGTGTGGGCAGTCGATCCAGCACTGCCAGGGCTCTGAGGCATTATTAAAGACACCAAGGCTGGGATATGGGTGTGTTTAGTTTCAGTGCTCGGTgcgcaaaacaaaataaatcagtccTATCTGTAATCCGAAAAGCAAAGTCACATTATCTAAGCAATTTGTCTTGTTTAATATTCAAACCAAAAACTCACTCTTcagctctcctcctgcctctctaCACAGGAAGTACGATACGTCCCCGTTTTATCGAGGAGGCGAGCAGGTAATTGGGCTCCGGGTCACCTGGGTTCGGGGAGTGCCGGAGCCTCATGAGCCAGTCCTTCGGCATGGTGCCTGGCACAGCatcacaatacatacacaacTCCAAcgtgtttataatatatacatatgtttaactgtataaatatcaagtttcaatgtatattcaactTTAATCCAT
>TU43260
TAGCATTCaactgtgaaatgtataatCAGCGGGGTGTTGCCCTGAAGTTGTTCAGTATGTTTTGTTGATTTGCAGGAGCTGTGCAGCAGTTTTGACTCTTATCATGTCAGCTTGGTTTGTATGGAAGTCCAAAAGCAAAGCACCTCAGCGCTGGAGAGCTTCTCAGCTGTATGTCATACAGATGCTGCATCTGACCTTATGTGCCTATGTGCTGAACAATACCCATTCCAGTCTACGTCTAAAGCAGGGCTTGCCTATTTTCAATCAGCTCGTTAGCTGGACAACACTAGGTAGGAATGAACCTGTAATACATACATTCTGGTATGTATTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019492 False 552 mRNA 0.45 7 24060322 24086481
TU43246 True 1319 lncRNA 0.38 3 24045689 24064965
TU43260 False 333 lncRNA 0.44 2 24070358 24071041

Neighbor

gene id symbol gene type direction distance location
AMCG00019488 NA coding upstream 470162 23566581 ~ 23575527 (+)
AMCG00019477 NA coding upstream 1343653 22693692 ~ 22702036 (+)
AMCG00019479 NA coding upstream 1357412 22670411 ~ 22688277 (+)
AMCG00019478 ropn1l coding upstream 1388780 22644268 ~ 22656909 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding upstream 1457555 22582760 ~ 22588134 (+)
AMCG00019494 NA coding downstream 8814 24095295 ~ 24102633 (+)
AMCG00019493 NA coding downstream 22481 24108962 ~ 24149017 (+)
AMCG00019495 NA coding downstream 67016 24153497 ~ 24178723 (+)
AMCG00019499 NA coding downstream 93714 24180195 ~ 24182210 (+)
AMCG00019498 NA coding downstream 99191 24185672 ~ 24191616 (+)
G34510 zfhx4,LOC107586695 non-coding upstream 374646 23670582 ~ 23671043 (+)
G34509 zfhx4,LOC107705239,LOC107666618,LOC107586695 non-coding upstream 391044 23654427 ~ 23654645 (+)
G34457 NA non-coding upstream 758711 23210255 ~ 23286978 (+)
G34446 NA non-coding upstream 1081691 22963457 ~ 22963998 (+)
G34445 LOC107590286,LOC107591257,LOC107701635,LOC108438556 non-coding upstream 1116379 22929020 ~ 22929310 (+)
G34581 NA non-coding downstream 58658 24145139 ~ 24145909 (+)
G34621 NA non-coding downstream 152935 24239416 ~ 24239813 (+)
G34632 NA non-coding downstream 240959 24327440 ~ 24328019 (+)
G34695 NA non-coding downstream 1015908 25102389 ~ 25103872 (+)
G34704 NA non-coding downstream 1034689 25121170 ~ 25121378 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 349888 23672125 ~ 23695801 (+)
AMCG00019480 NA other upstream 797590 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 841439 23185816 ~ 23204250 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other upstream 1402463 22615623 ~ 22643226 (+)
G34170 rpl7 other upstream 3434800 20607474 ~ 20610889 (+)
AMCG00019496 NA other downstream 129396 24215877 ~ 24219991 (+)
AMCG00019535 NA other downstream 4526774 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 5214474 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 8223556 32310037 ~ 32317571 (+)
AMCG00019609 NA other downstream 8237919 32324400 ~ 32392976 (+)

Expression


Co-expression Network