AMCG00019495


Basic Information

Item Value
gene id AMCG00019495
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24153497 ~ 24178723 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019495
GGAGAGCGCAGTGCGGGACGGCGCAGGCGCGGCGGCTGTCAGATACTCACAGTGGGCTGTTCGGGGAAGATTCGTGTCCGTTTCTACATTAAGGGAGGCAGCATCGAAACGCCACACACACGCAAATATACACTATATTTCGGCCTGTCACTATTTCATCTGGACAGTTTGCGTCAAGGAATAGACATGAGAGTGGATCTTACAGCCAGCTGGATATTCCGGGGGTGGATTACGTACTTCTTGGTGGCTCTTTGTGCACAGACAAACCCAGAGAATCCAGATTGCAACCAGTTCCAATATCTGCATGGCAGGAAGTGCTGCAGCAAGTGTAAACCAGGGCAGTATGCATTAGAACTGTGCACCAACAAATCAGACACTAAATGCCTTCCTTGTCCATCCAATGAGTACCAATCGGAGTGGAACAGAGAAGAGAGAtgccacacacaaaaatactgtGATGGAGGACGGGGCTTCAAGCCGAGAAATAAAACAGAGATCCGCACGGCGCCAGTGCCCTGTGAGTGTCTCTCAGGGTTCCAGTGCTCAGAAAATCTCAACTGCGAGTATTGTGTTAAAATGCCACCATGCAGTCCTGGGCAAGGATTTTCAGAAGGAGCAGCAGGCTGTGTGAATTGTTCCAATGGCTTCTTCTCAAATGTCTCCTCCCCAACAGAGCCCTGCAGACCCTGGACTGATTGCAAAGCACTTGGAAAGACTGAAGATCAGCctggaaatgcaaaaaaagatGTGATATGTGGGACTGTCATTCCACCAGTTCCAggaAACTCAGCATTATGGGGACTAGTGGCAGGTTTATCAGTGATAATTGTGATATCAATGGTCATCCTGTTCCTAGTCTGCTATAAGCTTAAACCTCTTTCTGACAATTTCCGATCCTGTGTTCTAAATTTGAAAAGAAGCCGGAAACAACAGGAGACATCATCTTCCTTCAAACACGGGATTCAAGACTGTTCCAGATCTGAAAACACGTACCTAATCCAAAATGATGAGAAGATACCGAATTGTGGAAACacatgtttaaatgaaatgacaGCGCTAGCTCAACCAGATGAAGATTCACAACTGACAGGAAACCACAGTGAACAATCGGCGTCTGAACCCTCACTTCCCACTACGTCCAGTTCCTGTAGCTGTGTGCTGTCTTTGAAAGAGCCCATGGAGGTCGGAGAGAATGAGGACTGTAGCCAAGTCGTGGCGACAGGTATTTCAAGAAACTGCTCATGTGGAAACGACAGTGTGACCTGGGAAGTCAAAGCCTTCCAAGGGGATTGCTTATATAGCAGTTTGTGCTGCGAGAGTGCAGTCGCAAGTCAAGGCTGTGCGAACAATAACAGACACAATGAGCCCTGCTGCTGCAGCGTTGACTCTCTGAATGGCCCAGTTCAGTCTTCACTCAGTGacaattttgaatgtatttcccTTGACGACTGCAATGAACAGAACCCTCATGCAGAGAGTAATCAACAGGCCCCCGACTCCCAGTTTCCCAAATACTGCTCAGATCCTCCTTTAGCATCTGgCAACGTGACAGGAAGCAATAACACCACATTCATTTCAAATGGACAAGTTATGAACTTCAGCGGGGAAGTCATAGTTGTGTACGTCAGTCGGGACTCTCAGAGCAGCCCTGGAGTAGCAGAGAGCTTCTCAAGTCCTGTTCAGGAGGAGAGCAATGGTGACACTCCTATGGAAGACCACAAACCAAAGGAGGACAGTGTAGTCCAGGAGAACATGGCCCACCCTTTGCAAGAGGAAACACAGCAAAGGAAAGCAGGAGCCCTCAGGAACTCAGGAATACCAGTGCAGGAGGAGAGCAATGAATGGACACCACATAAATGCGTTTAAGATATAGTGTTTTTGTGGCTTTGTAAATACTCATTACTGAAGCTTCTAAAACATCCAGTCAGCAAGTGGAAGGAAATTTGTGATAAGAACCTACTCCTGGACATCTTGTAAATTCTgttcacaatattattttatttttggcttgCTTTAAAACTCAAGGGGCAAGTTTGAAATACGTTAAATGCTATGCATTTGTTTACTAAACAGAAgctaatgtgtatatatgtatatatatatatatatatagtaattcCAGGTCAGTTATGTTTACCATTAATAGTACTGGTAAAGACGTGTTGACAAATCAATGACTGTTTGATTGAAATATtgcaatgaaataaaattgtttaGTGTGATGTTCTTACTGAGAAAGCTGTTGTAAATTCCTTTAGCATATTAAAATTGTCACAGGGAAGAAATACACTAGATACAATGTTAAACACATTCTGTCAAAAAAACTTTACTTGGACAAGGTAAATAAACATACCCAGATGAGTGTATGGAAATAGACTTTCAACTGAAGTTGTGCTAGAGCAACCCTTATAAAGGTTTTACTGTTGTGTACTGCAGAAGATTTGCAGTAACCGTGTGTGACATATCGGTAAGGTATGGAGAGTTATAGTAAACCATGATAAAACTGTGGGATGAAGTGAGTGAATGCTTTGTATATGCAATTGCAATAGTACAGTGAAAATGTACTGTGTTTCTAGAGGTATTTGGTCTTAATGGACTTTAAATTCAGTGGAGTCTGTGCCTTTAATCAGGGAAGAGAACACTGCCAAGAATTGGGAAAGGCCTTaagtaacagaaataaaataaccccCGATGTAATCCCATGAAAATGTGTTCTTGAAAAAGCTACCTCCAGAACAAAACCTCCAAAaggtaattttaaatgtttaaagtgcAAATGTAGAAAACTACAGTTTCAAAATCATCACGTCAACCTTGCACATGACTGCAGACATGGGGTATTCACACATCCCTTCATTGAAAAATCAAAGAGCTgtgcattttgattttgtattgtttaatgtttataaatgtttttggtcaatgctgttttaatttgattacttACTGATATGTTGTGTGAATGCACATTGTTCTTTGCCACAGTTCTGAAACTTTCTGACTGTTTGAAAAGCTTCTGCAACATCTTGGTTTTTAAGCAGGTCTATGAGATGACCTATTCAAGAGAAACAGCTGTTTAAACAGCTAAACCGCTATTGTTTTGGGCTAAAAAGGGGCTGGTTTTGTGTTGGGAAGTATCTagtgttaaataaatgacagcAGCATGCACCCAGTGGTGGCAGTGCAGTTCAAACAtatcaaatcaaaaaacaaagcatgggCAATTATATCTTTCAtcttaatagttttattttcattgcaattAACAAACAATCACTGCCTTGAACCTGTATAatgttaattacaaatgtaaagaagATTATCAAAAATATGAAGTACAGCAAACAGGAAGGTATGACGGAATTGTTCCTGGACAGCATGTGACTATGAAGTATCATTCttggtaaacatttattttaagttatgtaTTATGGGAATTTACTAATGTGTAGTGTAGCTTGTGACTTCTTTTatgttgttgatttatttttagtaacttaaaactgaataaatgttacatttatactGAACTTCACACATGAAGACTACTAAGTAGCTACAAGAATCCggtacaatacattaaatgaggTCATATACAATAATGTACTCAATAATAATAccttgaatgaatgaatggagtGACACACACCTGCCATTTGACACTACCTTTTCACTACGCAGTAGAAAAGCTGATATGAGGAATTACATGGCCAAATAAACTACAGAGAAAATCATAAGAATCAGACAAAGCCTGAAGTACAGCCCTACACTTTTGAATGGAGGAATGGAgtctttaaaaagcacttgtCATGACCCATTTAATCTCTCACttgaaaaataatcatgtaGCAGTTTAGTGTCTCCTGTCGCCATAGTGGTGGATGTGTTTGAAGCAGGGATTCTTAAACCTTTTTCTGCCCTTAACCCCCTAGGCTTAACCTGGCCAGCCATGAACCGCCACCCCAATTCAAACTCCTCGACTGGCTGATGCAATAttcacaaagggaaaaaaagcattacataataaaaatggaCACATTGTATGTATGACTCCAGATATGCATGTTATTCAGTGTACATACATGCAAAGGTGAGTTATttgacttaatgtttacaagaGGTGTGCACCTTGTCTGGCAAGACTAAGAGCATGGTCGACACTCCCCTCTGtgccatatattttaaaatatgttatgaaaggtatatttaacatttttaacagtggTTTACTCATCATGAAGCTGACACACATCTCAGTGTTTTACACTTCTGCTGCCATCTGCTGGTACATGTTAGTTTTAAAACAAGTGAGAGGTGATACTGTTTGCACTGGTTTGCACAAACAATTTCCCTCTGAACACCAGCAGCACAATCTGGAGTAGGTTATATGTGACAGGTTTGCAGTTTGATACTCTGTTTACACCATGAACGTTACTTATCTTTCCCCCAAGTATTATAGTTTCCAAGGAAATCGTGTAACCTATAAAATCTGTTATTTGAAATAACAGATACTATGTACTTAAAATGCCTGATTGCTACATATGTGCATTTCCATAAATTCAGGAGGTAATGTATCTTTCGTATcacttaacattaatttgcattattacattttcattggcAGATCATATGCACTCTTAtgaataattaaagtaaaacatattaGATAAATTACACTACTGTACACTCTCTTTCAGTTCCCAGAGGTGTCATACTTTATAACATAAATGTGATATTTGTTTAGCCTTTTTGTCTATTGGGAGTAATAACaagcaatttaaatgtgtgataTGAATACATAACATGTCAGGTTGTTTAGAATtatttagatagatagatggatatttgtttaattaagtacACTCACAACCAAGGAGAACGTTCAATTTTGGCCCTGTCTGTAGGATGTAATGTTCTGTAAGTctgacaaaataatatatattttaaaaaatgtgttctatCCAATGAATACAAGTATATCAAAACAGAATGGCCAAATTGtgatattgttatttaattcaccatttaattaatcaaattacatatttttttgcatgttaATAAACATGGCACCagtcatattattataatgttgattaatttaaatctcGAGATGAGGGAGGTCATGCAGTACAAGTATGAATTCTGTAActcacattacatttaaacgGTGTTATCCACAAACATTCTTCCAGTTTCAATATGACTACATAGACAcaatgatttcattttcattttactgctGTACCTGTAACTGTAAGCACAACTGCTGAGAATGTCATTTCTTCTTTGTaagtattatattttcaattgatGTTATAccttgaaataaattatgtaattaccTGTATGCTC

Function

GO: NA

KEGG:

id description
K03160 TNFRSF5, CD40; tumor necrosis factor receptor superfamily member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019495 True 5355 mRNA 0.39 10 24153497 24178723

Neighbor

gene id symbol gene type direction distance location
AMCG00019493 NA coding upstream 4480 24108962 ~ 24149017 (+)
AMCG00019494 NA coding upstream 50864 24095295 ~ 24102633 (+)
AMCG00019488 NA coding upstream 577970 23566581 ~ 23575527 (+)
AMCG00019477 NA coding upstream 1451461 22693692 ~ 22702036 (+)
AMCG00019479 NA coding upstream 1465220 22670411 ~ 22688277 (+)
AMCG00019499 NA coding downstream 1472 24180195 ~ 24182210 (+)
AMCG00019498 NA coding downstream 6949 24185672 ~ 24191616 (+)
AMCG00019497 NA coding downstream 29844 24208567 ~ 24215367 (+)
AMCG00019503 cntnap2,LOC107595149 coding downstream 567754 24746477 ~ 24759304 (+)
AMCG00019505 cntnap2a,cntnap2,LOC107595149 coding downstream 631828 24810551 ~ 24880556 (+)
G34581 NA non-coding upstream 7588 24145139 ~ 24145909 (+)
G34510 zfhx4,LOC107586695 non-coding upstream 482454 23670582 ~ 23671043 (+)
G34509 zfhx4,LOC107705239,LOC107666618,LOC107586695 non-coding upstream 498852 23654427 ~ 23654645 (+)
G34457 NA non-coding upstream 866519 23210255 ~ 23286978 (+)
G34446 NA non-coding upstream 1189499 22963457 ~ 22963998 (+)
G34621 NA non-coding downstream 60693 24239416 ~ 24239813 (+)
G34632 NA non-coding downstream 148717 24327440 ~ 24328019 (+)
G34695 NA non-coding downstream 923666 25102389 ~ 25103872 (+)
G34704 NA non-coding downstream 942447 25121170 ~ 25121378 (+)
G34742 anks6 non-coding downstream 1163538 25342261 ~ 25347728 (+)
AMCG00019492 NA other upstream 67016 24045689 ~ 24086481 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 457696 23672125 ~ 23695801 (+)
AMCG00019480 NA other upstream 905398 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 949247 23185816 ~ 23204250 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other upstream 1510271 22615623 ~ 22643226 (+)
AMCG00019496 NA other downstream 37154 24215877 ~ 24219991 (+)
AMCG00019535 NA other downstream 4434532 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 5122232 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 8131314 32310037 ~ 32317571 (+)
AMCG00019609 NA other downstream 8145677 32324400 ~ 32392976 (+)

Expression


Co-expression Network