AMCG00019498


Basic Information

Item Value
gene id AMCG00019498
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24185672 ~ 24191616 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019498
AACGTTTTTGCGAAGAGCTGGTCTTCCGATGTCAAGCTTGATGGAAAGACAGCAATAGTCACTGGAGCCAACACTGGCATTGGGAAGGAAACAGCAAAGGACCTGGCCAGGAGGGGAGCTCGGGTGATTCTGGCATGCAGAGATATGGAGAAGGCTAAAGTGGCAGTTAATGAGATTATAGAAGAAACCGGGAATGACCGGGTCATTCCGTGCAAAATGGATCTCTCTGACACCAAGTCCATCTGTGAATTTGCAGAACAAATCTACAACAtggaggagccaattcattttttaattaacaatgcGGGAGTGGCAATGTGCCCCTATACCACTACAGCTGATGGGTATGAAATGCAGTTTGGAGTCAATCATCTTGGCCATTTTTTCCTCACGTTTTTACTGCTTGACCTATTAAAGCAGTCCGCTCCTTCTAGAGTCATCAATGTCTCTTCAGTCTCACACTACATGGGAAAGATTCAGTTTGATGACCTGAACAGTGAGAAGGATTACCACCCAGTGAAAGCCTATGTGCAGAGCAAACTGGCCAATGTTCTCTTCACTCGGGAGCTGTCGAGAAAGCTACGCGGCACAGGAGTAACAGTGTATGCTGTAGATCCTGGTGCAGTTTACACTGAAGCAATCCGACACATGAAACAATTCATCCAGATTTTCATAACCTCATTTAACTTCCTCATCAAAACACCAGCAGAGGGAGCCTacaccacactgtactgtgcCTTAACCCCAGATCTGGAGAATGGAGGCTACTTCAgCAATTGTGCCCCGACCGTCTGCTCCAGAGCTGCAGCCGATGACAGATCTGCTAAGAAGTTGTGGGACCTCAGCTGTCATTTGCTGGGAATA

Function

GO: NA

KEGG:

id description
K11152 RDH11; retinol dehydrogenase 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019498 True 864 mRNA 0.47 6 24185672 24191616

Neighbor

gene id symbol gene type direction distance location
AMCG00019499 NA coding upstream 3462 24180195 ~ 24182210 (+)
AMCG00019495 NA coding upstream 6949 24153497 ~ 24178723 (+)
AMCG00019493 NA coding upstream 36655 24108962 ~ 24149017 (+)
AMCG00019494 NA coding upstream 83039 24095295 ~ 24102633 (+)
AMCG00019488 NA coding upstream 610145 23566581 ~ 23575527 (+)
AMCG00019497 NA coding downstream 16951 24208567 ~ 24215367 (+)
AMCG00019503 cntnap2,LOC107595149 coding downstream 554861 24746477 ~ 24759304 (+)
AMCG00019505 cntnap2a,cntnap2,LOC107595149 coding downstream 618935 24810551 ~ 24880556 (+)
AMCG00019504 NA coding downstream 757835 24949451 ~ 24952124 (+)
AMCG00019506 cntnap2,cntnap2a,LOC107695381,LOC107741949,LOC107686721 coding downstream 792812 24984428 ~ 24990342 (+)
G34581 NA non-coding upstream 39763 24145139 ~ 24145909 (+)
G34510 zfhx4,LOC107586695 non-coding upstream 514629 23670582 ~ 23671043 (+)
G34509 zfhx4,LOC107705239,LOC107666618,LOC107586695 non-coding upstream 531027 23654427 ~ 23654645 (+)
G34457 NA non-coding upstream 898694 23210255 ~ 23286978 (+)
G34446 NA non-coding upstream 1221674 22963457 ~ 22963998 (+)
G34621 NA non-coding downstream 47800 24239416 ~ 24239813 (+)
G34632 NA non-coding downstream 135824 24327440 ~ 24328019 (+)
G34695 NA non-coding downstream 910773 25102389 ~ 25103872 (+)
G34704 NA non-coding downstream 929554 25121170 ~ 25121378 (+)
G34742 anks6 non-coding downstream 1150645 25342261 ~ 25347728 (+)
AMCG00019492 NA other upstream 99191 24045689 ~ 24086481 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 489871 23672125 ~ 23695801 (+)
AMCG00019480 NA other upstream 937573 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 981422 23185816 ~ 23204250 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other upstream 1542446 22615623 ~ 22643226 (+)
AMCG00019496 NA other downstream 24261 24215877 ~ 24219991 (+)
AMCG00019535 NA other downstream 4421639 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 5109339 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 8118421 32310037 ~ 32317571 (+)
AMCG00019609 NA other downstream 8132784 32324400 ~ 32392976 (+)

Expression


Co-expression Network