AMCG00019509 (hus1)


Basic Information

Item Value
gene id AMCG00019509
gene name hus1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25152857 ~ 25158446 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019509
GCGCAGGACTCATCTTGTGGACGTGCGGTCGTTACAAAATGTAACACCGGCAGAGGCGCCACTTCTTAAACTGTCTCTCCGTGaaagtgttgtgttttattacagaaaatttGTTTTTACGTTTGTGTaattgacataaaataaaataaaaatgaagttcCGAGCTAAGATGGTGGATGTCAGCTGCCTCAATCATTTTACATGTGTGGTGAATACAATCTCCAAACTAACCAAGACCTGTATGCTGCGGCTGACGGCCGGTCACCTCTATTTCATGCTCTCTGACAAAGTCGCCAATGGGGGCGTGGGCATGTGGTGCGAGTTATCTCAGGGCAACTTTTTTGACGAGTTTCAGCTGGAAGGTGTTTCGGCAGAAGCCAACGAGATCTATCTGGAACTCGTCCCCGAGAATCTCTTCAGGGCGTTGAAAACGGCATATAATGCTCGGTCTCTTAAAATCAAACTGACGAAAAAGCACTGTCCTTGTATCACTGTGGCAGTGGAGCTGCCTTCCTTGTCCAGTGTGAATCGCATCGTCACGCATGACATTCCAGTGCAAGTCATACCCCGCAGACTCTGGCAAGACTTCAAGGAACCGAGTGTGCCAGATTTCGATGTTAGTATTTATCTGCCTTCTCTGAAGATAATGAAGAATGTTGTGGATAGAATGAAGAATCTCTCCAACTTTCTTGTGCTGGAAGCGAATCAGAATGGTGAAATGAATCTGAAGATAGAAACTGACCTGGTGTCCGTCACCACGCATTTTAAAGGCCTGGGGAATCCTCCCTGGGGTGACGAGAATTCCCAAGGGCCCGGTCGGGACAGAAACCCGGAGACCATGGCTGAGGCCCGGGTGGACATCAGGAAACTTCAACAGTTTCTAGCTGGACAGCAAGTCAATCCCACCAAAGCCATGTGCAACATCGTTAGCAACAGAATTGTACACTTCATTTTGCTACATGAGGATGTGTCTCTGCAGTACTTCATACCCACAGTGGCATAAGAAAATATGTTCCCGACAGAATGCTTTGAAGacttgtatttatatgtaaaaagGCCATGATTGAGATATTaggtgatgttttatttaatagttgatgtatatatgtatatttttaaatgagactACTGTGTTAAATCAACATATAATTGTACTGCAATACCAATCATCTTACACTTCTGTACACCTGGTGAAGTTTGATTGCTGAAGCTTATATCTGCACTATAACAATCCAGGCCATCTGTATTAAACCAATTCATATCCATTCTGTTTTCTTGGATTAGAGTTTggtgtatataaaaaaagtaattgaaaacagtttttcttAGGTTACTTTCTTACAACTGTAAATAATCCACCCTACATAAAAGATGATCTAGTTCATATTCTTAAGTATTGTGAATTAAATGCAGAAAGTCTGTTTTGATGACAAATTtgcaacaaagaaaatgcatatgAGTGGAAGCAGAtggaaatgtgttaatgcaAATCTTTTTGTTCACTTCATGTAATTCATGGTAAAATTTgtcttttgtaaataaaaaaatatattttccttgaA

Function

symbol description
hus1 Involved in DNA damage checkpoint signaling and cellular response to ionizing radiation. Located in nucleus.

NR:

description
PREDICTED: checkpoint protein HUS1 isoform X2

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0006281 DNA repair biological_process
GO:0030896 checkpoint clamp complex cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K10903 HUS1; HUS1 checkpoint protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019509 True 1562 mRNA 0.40 8 25152857 25158446

Neighbor

gene id symbol gene type direction distance location
AMCG00019512 NA coding downstream 13540 25106292 ~ 25139317 (-)
AMCG00019511 pdia4,LOC107727231,LOC107741760,LOC107686698,LOC107695410 coding downstream 50284 25098354 ~ 25102573 (-)
AMCG00019510 ezh2 coding downstream 72147 25065546 ~ 25080710 (-)
AMCG00019502 NA coding downstream 686326 24219089 ~ 24466531 (-)
AMCG00019501 hnf4g coding downstream 1141803 24001200 ~ 24011054 (-)
AMCG00019521 NA coding upstream 360581 25519027 ~ 25522993 (-)
AMCG00019524 LOC105920200 coding upstream 446456 25604902 ~ 25613129 (-)
AMCG00019525 NA coding upstream 473251 25631697 ~ 25639027 (-)
AMCG00019527 NA coding upstream 2194771 27353217 ~ 27379929 (-)
AMCG00019536 drosha,rnasen,LOC107556767 coding upstream 3501571 28660017 ~ 28711602 (-)
G34596 NA non-coding downstream 1006006 24146194 ~ 24146851 (-)
G34541 NA non-coding downstream 1205400 23898273 ~ 23947457 (-)
G34514 NA non-coding downstream 1510616 23610429 ~ 23642241 (-)
G34502 NA non-coding downstream 1574572 23576527 ~ 23578285 (-)
G34476 NA non-coding downstream 1865858 23210241 ~ 23286999 (-)
G34763 LOC107656144 non-coding upstream 353638 25512084 ~ 25515224 (-)
G34831 NA non-coding upstream 657247 25815693 ~ 25816056 (-)
G34846 NA non-coding upstream 1014616 26173062 ~ 26211553 (-)
G34853 NA non-coding upstream 1133909 26292355 ~ 26336737 (-)
G34859 NA non-coding upstream 1218671 26377117 ~ 26377354 (-)
AMCG00019500 pign other downstream 1058193 24052011 ~ 24094664 (-)
G34470 NA other downstream 1953249 23147861 ~ 23199608 (-)
AMCG00019487 NA other downstream 2408675 22670647 ~ 22744182 (-)
AMCG00019446 ube2w other downstream 4387361 20743530 ~ 20765496 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 5697888 19442395 ~ 19454969 (-)
G35067 NA other upstream 4359550 29517996 ~ 29521984 (-)
AMCG00019556 NA other upstream 4377298 29535744 ~ 29550162 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other upstream 4480120 29638566 ~ 29645963 (-)
G35101 NA other upstream 4520783 29679229 ~ 29685302 (-)
AMCG00019597 NA other upstream 6263583 31422029 ~ 31427583 (-)

Expression


Co-expression Network